Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30558 | 5' | -57.2 | NC_006548.1 | + | 746 | 0.72 | 0.209983 |
Target: 5'- aGCCAGauCAGCUcaCGGCAAU-CCUGGCg -3' miRNA: 3'- gCGGUC--GUCGA--GCUGUUAuGGGCCGa -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 789 | 0.67 | 0.425456 |
Target: 5'- gGCCAGCuGCgccUCGAUGAccuggACCuCGGCg -3' miRNA: 3'- gCGGUCGuCG---AGCUGUUa----UGG-GCCGa -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 848 | 0.74 | 0.142484 |
Target: 5'- uGCCGGCGGCUCG-Cu-UGCUgGGCUg -3' miRNA: 3'- gCGGUCGUCGAGCuGuuAUGGgCCGA- -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 1048 | 0.71 | 0.253131 |
Target: 5'- uCGUCAGCAGCUCGGCcugcaggacGAUGucuaUCGGCa -3' miRNA: 3'- -GCGGUCGUCGAGCUG---------UUAUg---GGCCGa -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 1140 | 0.73 | 0.188283 |
Target: 5'- gGCCAGCAacGCcugugCGGCGAUcAUCCGGCUc -3' miRNA: 3'- gCGGUCGU--CGa----GCUGUUA-UGGGCCGA- -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 1349 | 0.7 | 0.266733 |
Target: 5'- uGuCCGGCAGCUCGcGCAucuuGUACCCGaCUu -3' miRNA: 3'- gC-GGUCGUCGAGC-UGU----UAUGGGCcGA- -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 1733 | 0.66 | 0.475643 |
Target: 5'- uCGCCAGCaAGCUCG-CAAUgagAUCCG-Cg -3' miRNA: 3'- -GCGGUCG-UCGAGCuGUUA---UGGGCcGa -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 2374 | 0.66 | 0.496531 |
Target: 5'- gGCCGGCGGUUUucCAuccgAgCCGGCUg -3' miRNA: 3'- gCGGUCGUCGAGcuGUua--UgGGCCGA- -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 3811 | 0.67 | 0.432294 |
Target: 5'- cCGCCAugcacuGCAGCUCcGCAugcagcuuggagaaGUGgCCGGCg -3' miRNA: 3'- -GCGGU------CGUCGAGcUGU--------------UAUgGGCCGa -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 4211 | 0.66 | 0.486034 |
Target: 5'- aCGCCuguaucAGCGGUUCGAgGGUGuccuCCgCGGCa -3' miRNA: 3'- -GCGG------UCGUCGAGCUgUUAU----GG-GCCGa -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 4546 | 0.66 | 0.506066 |
Target: 5'- -aCCAGCGGCcgCGACAAgacgagccagcucUACCC-GCUg -3' miRNA: 3'- gcGGUCGUCGa-GCUGUU-------------AUGGGcCGA- -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 4833 | 0.67 | 0.425456 |
Target: 5'- aGCCGGCGGCaUGGCug-ACCUucaaGGCUc -3' miRNA: 3'- gCGGUCGUCGaGCUGuuaUGGG----CCGA- -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 5325 | 0.66 | 0.495477 |
Target: 5'- gCGCCGG-GGCUCcACuucuucaAAUGCCUGGCg -3' miRNA: 3'- -GCGGUCgUCGAGcUG-------UUAUGGGCCGa -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 5536 | 0.66 | 0.475643 |
Target: 5'- gGCUcgAGCGG-UCGACcugaGCCCGGCg -3' miRNA: 3'- gCGG--UCGUCgAGCUGuua-UGGGCCGa -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 5671 | 0.67 | 0.405337 |
Target: 5'- uGCCGGaagacCAGCUCGACGccaucgccaaccaGUugcgcaagccgGCCCGGCc -3' miRNA: 3'- gCGGUC-----GUCGAGCUGU-------------UA-----------UGGGCCGa -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 7059 | 0.68 | 0.387659 |
Target: 5'- gCGCCAGCGGCUUGA-----UCCGuGCg -3' miRNA: 3'- -GCGGUCGUCGAGCUguuauGGGC-CGa -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 8281 | 0.69 | 0.311073 |
Target: 5'- aGCCGGCAGCg-------ACCCGGCg -3' miRNA: 3'- gCGGUCGUCGagcuguuaUGGGCCGa -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 11865 | 0.67 | 0.419647 |
Target: 5'- uCGCCcGCAugaauGCUCGGcCAaccuggaggucguagGUGCCUGGCUg -3' miRNA: 3'- -GCGGuCGU-----CGAGCU-GU---------------UAUGGGCCGA- -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 12147 | 0.68 | 0.382183 |
Target: 5'- gGCCAGCAGCagGAgcauCAgcgcaccgacccagcAUGCUCGGCg -3' miRNA: 3'- gCGGUCGUCGagCU----GU---------------UAUGGGCCGa -5' |
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30558 | 5' | -57.2 | NC_006548.1 | + | 12218 | 0.67 | 0.406281 |
Target: 5'- -aCCAGCAcGCggCGAUAcUGCUCGGCg -3' miRNA: 3'- gcGGUCGU-CGa-GCUGUuAUGGGCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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