miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30558 5' -57.2 NC_006548.1 + 746 0.72 0.209983
Target:  5'- aGCCAGauCAGCUcaCGGCAAU-CCUGGCg -3'
miRNA:   3'- gCGGUC--GUCGA--GCUGUUAuGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 789 0.67 0.425456
Target:  5'- gGCCAGCuGCgccUCGAUGAccuggACCuCGGCg -3'
miRNA:   3'- gCGGUCGuCG---AGCUGUUa----UGG-GCCGa -5'
30558 5' -57.2 NC_006548.1 + 848 0.74 0.142484
Target:  5'- uGCCGGCGGCUCG-Cu-UGCUgGGCUg -3'
miRNA:   3'- gCGGUCGUCGAGCuGuuAUGGgCCGA- -5'
30558 5' -57.2 NC_006548.1 + 1048 0.71 0.253131
Target:  5'- uCGUCAGCAGCUCGGCcugcaggacGAUGucuaUCGGCa -3'
miRNA:   3'- -GCGGUCGUCGAGCUG---------UUAUg---GGCCGa -5'
30558 5' -57.2 NC_006548.1 + 1140 0.73 0.188283
Target:  5'- gGCCAGCAacGCcugugCGGCGAUcAUCCGGCUc -3'
miRNA:   3'- gCGGUCGU--CGa----GCUGUUA-UGGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 1349 0.7 0.266733
Target:  5'- uGuCCGGCAGCUCGcGCAucuuGUACCCGaCUu -3'
miRNA:   3'- gC-GGUCGUCGAGC-UGU----UAUGGGCcGA- -5'
30558 5' -57.2 NC_006548.1 + 1733 0.66 0.475643
Target:  5'- uCGCCAGCaAGCUCG-CAAUgagAUCCG-Cg -3'
miRNA:   3'- -GCGGUCG-UCGAGCuGUUA---UGGGCcGa -5'
30558 5' -57.2 NC_006548.1 + 2374 0.66 0.496531
Target:  5'- gGCCGGCGGUUUucCAuccgAgCCGGCUg -3'
miRNA:   3'- gCGGUCGUCGAGcuGUua--UgGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 3811 0.67 0.432294
Target:  5'- cCGCCAugcacuGCAGCUCcGCAugcagcuuggagaaGUGgCCGGCg -3'
miRNA:   3'- -GCGGU------CGUCGAGcUGU--------------UAUgGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 4211 0.66 0.486034
Target:  5'- aCGCCuguaucAGCGGUUCGAgGGUGuccuCCgCGGCa -3'
miRNA:   3'- -GCGG------UCGUCGAGCUgUUAU----GG-GCCGa -5'
30558 5' -57.2 NC_006548.1 + 4546 0.66 0.506066
Target:  5'- -aCCAGCGGCcgCGACAAgacgagccagcucUACCC-GCUg -3'
miRNA:   3'- gcGGUCGUCGa-GCUGUU-------------AUGGGcCGA- -5'
30558 5' -57.2 NC_006548.1 + 4833 0.67 0.425456
Target:  5'- aGCCGGCGGCaUGGCug-ACCUucaaGGCUc -3'
miRNA:   3'- gCGGUCGUCGaGCUGuuaUGGG----CCGA- -5'
30558 5' -57.2 NC_006548.1 + 5325 0.66 0.495477
Target:  5'- gCGCCGG-GGCUCcACuucuucaAAUGCCUGGCg -3'
miRNA:   3'- -GCGGUCgUCGAGcUG-------UUAUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 5536 0.66 0.475643
Target:  5'- gGCUcgAGCGG-UCGACcugaGCCCGGCg -3'
miRNA:   3'- gCGG--UCGUCgAGCUGuua-UGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 5671 0.67 0.405337
Target:  5'- uGCCGGaagacCAGCUCGACGccaucgccaaccaGUugcgcaagccgGCCCGGCc -3'
miRNA:   3'- gCGGUC-----GUCGAGCUGU-------------UA-----------UGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 7059 0.68 0.387659
Target:  5'- gCGCCAGCGGCUUGA-----UCCGuGCg -3'
miRNA:   3'- -GCGGUCGUCGAGCUguuauGGGC-CGa -5'
30558 5' -57.2 NC_006548.1 + 8281 0.69 0.311073
Target:  5'- aGCCGGCAGCg-------ACCCGGCg -3'
miRNA:   3'- gCGGUCGUCGagcuguuaUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 11865 0.67 0.419647
Target:  5'- uCGCCcGCAugaauGCUCGGcCAaccuggaggucguagGUGCCUGGCUg -3'
miRNA:   3'- -GCGGuCGU-----CGAGCU-GU---------------UAUGGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 12147 0.68 0.382183
Target:  5'- gGCCAGCAGCagGAgcauCAgcgcaccgacccagcAUGCUCGGCg -3'
miRNA:   3'- gCGGUCGUCGagCU----GU---------------UAUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 12218 0.67 0.406281
Target:  5'- -aCCAGCAcGCggCGAUAcUGCUCGGCg -3'
miRNA:   3'- gcGGUCGU-CGa-GCUGUuAUGGGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.