Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30567 | 3' | -53.7 | NC_006548.1 | + | 5853 | 0.66 | 0.699149 |
Target: 5'- cGACGACAcccaacUGcccACCUUUaugcCGCGaCGCGGCa -3' miRNA: 3'- -UUGUUGU------AC---UGGAAA----GCGC-GCGCCGg -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 32566 | 0.66 | 0.699149 |
Target: 5'- cACcGCGUGGCCgUUUGCGC-CGGaCUg -3' miRNA: 3'- uUGuUGUACUGGaAAGCGCGcGCC-GG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 36813 | 0.66 | 0.699149 |
Target: 5'- --aGGCGcGGCCUUaUGCGCcUGGCCg -3' miRNA: 3'- uugUUGUaCUGGAAaGCGCGcGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 38407 | 0.66 | 0.699149 |
Target: 5'- cGCAAUaaAUGacgcgcccuaGCCgUUUCGUGUGCGGCa -3' miRNA: 3'- uUGUUG--UAC----------UGG-AAAGCGCGCGCCGg -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 23502 | 0.66 | 0.676413 |
Target: 5'- cACGAUggGAUCUUUCucuGCGCcUGGCCc -3' miRNA: 3'- uUGUUGuaCUGGAAAG---CGCGcGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 2801 | 0.66 | 0.676413 |
Target: 5'- cAGCGugAUGACC--UC-CGCGCGaGCa -3' miRNA: 3'- -UUGUugUACUGGaaAGcGCGCGC-CGg -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 30672 | 0.66 | 0.669552 |
Target: 5'- gGACAGgGUGGCaggaugaagccCGCGC-CGGCCg -3' miRNA: 3'- -UUGUUgUACUGgaaa-------GCGCGcGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 4836 | 0.66 | 0.669551 |
Target: 5'- cGGCGGCAuggcUGACCUUcaaggcucggugcaaUUGCGCgaaGCGuGCCu -3' miRNA: 3'- -UUGUUGU----ACUGGAA---------------AGCGCG---CGC-CGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 32897 | 0.66 | 0.651194 |
Target: 5'- -cCAGCGgguaucgcacucGACCgUUUGUGCGCcGGCCg -3' miRNA: 3'- uuGUUGUa-----------CUGGaAAGCGCGCG-CCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 35855 | 0.66 | 0.650045 |
Target: 5'- -cCGGCGUGcccgugcgaagaauGCCgg-CGCgauccGCGCGGCCg -3' miRNA: 3'- uuGUUGUAC--------------UGGaaaGCG-----CGCGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 1118 | 0.67 | 0.630486 |
Target: 5'- gAGCgAGCcUGGCCg-UC-UGCGCGGCCa -3' miRNA: 3'- -UUG-UUGuACUGGaaAGcGCGCGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 6770 | 0.67 | 0.630486 |
Target: 5'- gGAUcGCGUGGCCgcugacCGUGUGUGGUCc -3' miRNA: 3'- -UUGuUGUACUGGaaa---GCGCGCGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 9515 | 0.67 | 0.618979 |
Target: 5'- -cCAGCAggaGGCUgcucuggUGCGCGuCGGCCa -3' miRNA: 3'- uuGUUGUa--CUGGaaa----GCGCGC-GCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 36031 | 0.67 | 0.607486 |
Target: 5'- -cCGACGUcGACaCguugcagUCGCGCGCcGCCa -3' miRNA: 3'- uuGUUGUA-CUG-Gaa-----AGCGCGCGcCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 16042 | 0.67 | 0.583436 |
Target: 5'- cGCAGCcgucgucugcuugGUGACC--UCGCGCaagGCGGCg -3' miRNA: 3'- uUGUUG-------------UACUGGaaAGCGCG---CGCCGg -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 24339 | 0.68 | 0.573184 |
Target: 5'- cAGCGACAUGAuuuacuCCUUggcgGCG-GUGGCCg -3' miRNA: 3'- -UUGUUGUACU------GGAAag--CGCgCGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 13189 | 0.68 | 0.573184 |
Target: 5'- uGCAGCAguugcuccucGGCCUgguuggCGCGCGCGaCCu -3' miRNA: 3'- uUGUUGUa---------CUGGAaa----GCGCGCGCcGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 29890 | 0.68 | 0.573183 |
Target: 5'- cGCuGCAUGACUgguccggCGCuGUGCGGCa -3' miRNA: 3'- uUGuUGUACUGGaaa----GCG-CGCGCCGg -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 2001 | 0.68 | 0.539355 |
Target: 5'- uGCcGCG-GGCaag-CGCGCGCGGCUg -3' miRNA: 3'- uUGuUGUaCUGgaaaGCGCGCGCCGG- -5' |
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30567 | 3' | -53.7 | NC_006548.1 | + | 8719 | 0.69 | 0.50623 |
Target: 5'- --aGACAaGACCUUggaCGCGCuGCGGgCg -3' miRNA: 3'- uugUUGUaCUGGAAa--GCGCG-CGCCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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