miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30567 3' -53.7 NC_006548.1 + 38407 0.66 0.699149
Target:  5'- cGCAAUaaAUGacgcgcccuaGCCgUUUCGUGUGCGGCa -3'
miRNA:   3'- uUGUUG--UAC----------UGG-AAAGCGCGCGCCGg -5'
30567 3' -53.7 NC_006548.1 + 32566 0.66 0.699149
Target:  5'- cACcGCGUGGCCgUUUGCGC-CGGaCUg -3'
miRNA:   3'- uUGuUGUACUGGaAAGCGCGcGCC-GG- -5'
30567 3' -53.7 NC_006548.1 + 36813 0.66 0.699149
Target:  5'- --aGGCGcGGCCUUaUGCGCcUGGCCg -3'
miRNA:   3'- uugUUGUaCUGGAAaGCGCGcGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 5853 0.66 0.699149
Target:  5'- cGACGACAcccaacUGcccACCUUUaugcCGCGaCGCGGCa -3'
miRNA:   3'- -UUGUUGU------AC---UGGAAA----GCGC-GCGCCGg -5'
30567 3' -53.7 NC_006548.1 + 23502 0.66 0.676413
Target:  5'- cACGAUggGAUCUUUCucuGCGCcUGGCCc -3'
miRNA:   3'- uUGUUGuaCUGGAAAG---CGCGcGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 2801 0.66 0.676413
Target:  5'- cAGCGugAUGACC--UC-CGCGCGaGCa -3'
miRNA:   3'- -UUGUugUACUGGaaAGcGCGCGC-CGg -5'
30567 3' -53.7 NC_006548.1 + 30672 0.66 0.669552
Target:  5'- gGACAGgGUGGCaggaugaagccCGCGC-CGGCCg -3'
miRNA:   3'- -UUGUUgUACUGgaaa-------GCGCGcGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 4836 0.66 0.669551
Target:  5'- cGGCGGCAuggcUGACCUUcaaggcucggugcaaUUGCGCgaaGCGuGCCu -3'
miRNA:   3'- -UUGUUGU----ACUGGAA---------------AGCGCG---CGC-CGG- -5'
30567 3' -53.7 NC_006548.1 + 32897 0.66 0.651194
Target:  5'- -cCAGCGgguaucgcacucGACCgUUUGUGCGCcGGCCg -3'
miRNA:   3'- uuGUUGUa-----------CUGGaAAGCGCGCG-CCGG- -5'
30567 3' -53.7 NC_006548.1 + 35855 0.66 0.650045
Target:  5'- -cCGGCGUGcccgugcgaagaauGCCgg-CGCgauccGCGCGGCCg -3'
miRNA:   3'- uuGUUGUAC--------------UGGaaaGCG-----CGCGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 1118 0.67 0.630486
Target:  5'- gAGCgAGCcUGGCCg-UC-UGCGCGGCCa -3'
miRNA:   3'- -UUG-UUGuACUGGaaAGcGCGCGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 6770 0.67 0.630486
Target:  5'- gGAUcGCGUGGCCgcugacCGUGUGUGGUCc -3'
miRNA:   3'- -UUGuUGUACUGGaaa---GCGCGCGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 9515 0.67 0.618979
Target:  5'- -cCAGCAggaGGCUgcucuggUGCGCGuCGGCCa -3'
miRNA:   3'- uuGUUGUa--CUGGaaa----GCGCGC-GCCGG- -5'
30567 3' -53.7 NC_006548.1 + 36031 0.67 0.607486
Target:  5'- -cCGACGUcGACaCguugcagUCGCGCGCcGCCa -3'
miRNA:   3'- uuGUUGUA-CUG-Gaa-----AGCGCGCGcCGG- -5'
30567 3' -53.7 NC_006548.1 + 16042 0.67 0.583436
Target:  5'- cGCAGCcgucgucugcuugGUGACC--UCGCGCaagGCGGCg -3'
miRNA:   3'- uUGUUG-------------UACUGGaaAGCGCG---CGCCGg -5'
30567 3' -53.7 NC_006548.1 + 24339 0.68 0.573184
Target:  5'- cAGCGACAUGAuuuacuCCUUggcgGCG-GUGGCCg -3'
miRNA:   3'- -UUGUUGUACU------GGAAag--CGCgCGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 13189 0.68 0.573184
Target:  5'- uGCAGCAguugcuccucGGCCUgguuggCGCGCGCGaCCu -3'
miRNA:   3'- uUGUUGUa---------CUGGAaa----GCGCGCGCcGG- -5'
30567 3' -53.7 NC_006548.1 + 29890 0.68 0.573183
Target:  5'- cGCuGCAUGACUgguccggCGCuGUGCGGCa -3'
miRNA:   3'- uUGuUGUACUGGaaa----GCG-CGCGCCGg -5'
30567 3' -53.7 NC_006548.1 + 2001 0.68 0.539355
Target:  5'- uGCcGCG-GGCaag-CGCGCGCGGCUg -3'
miRNA:   3'- uUGuUGUaCUGgaaaGCGCGCGCCGG- -5'
30567 3' -53.7 NC_006548.1 + 8719 0.69 0.50623
Target:  5'- --aGACAaGACCUUggaCGCGCuGCGGgCg -3'
miRNA:   3'- uugUUGUaCUGGAAa--GCGCG-CGCCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.