Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30567 | 5' | -62.6 | NC_006548.1 | + | 33891 | 1.08 | 0.00013 |
Target: 5'- aUGGACGGCGCAUGACCGGCCAGGCCAg -3' miRNA: 3'- -ACCUGCCGCGUACUGGCCGGUCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 10903 | 0.76 | 0.044788 |
Target: 5'- cGGAgGGCGCAaauucgcaUGACCGacGCaCAGGCCAu -3' miRNA: 3'- aCCUgCCGCGU--------ACUGGC--CG-GUCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 33062 | 0.76 | 0.049817 |
Target: 5'- cUGGGCGGUGCGaaUGggguacaagcgggaGCCGGCC-GGCCAg -3' miRNA: 3'- -ACCUGCCGCGU--AC--------------UGGCCGGuCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 32465 | 0.75 | 0.054763 |
Target: 5'- -cGGCGGCGaCGgcuGCCGGCCAGGCUg -3' miRNA: 3'- acCUGCCGC-GUac-UGGCCGGUCCGGu -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 32969 | 0.74 | 0.0614 |
Target: 5'- cGGugcaGCGGCGC-UGGCCGGCC-GGCUc -3' miRNA: 3'- aCC----UGCCGCGuACUGGCCGGuCCGGu -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 14302 | 0.74 | 0.065003 |
Target: 5'- cGGACcugcaGGCGCAguucCCGaGCCAGGCCGa -3' miRNA: 3'- aCCUG-----CCGCGUacu-GGC-CGGUCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 20851 | 0.72 | 0.088757 |
Target: 5'- cUGGcGCGGCaGCAggcGGCCGGCCuugaccAGGCCu -3' miRNA: 3'- -ACC-UGCCG-CGUa--CUGGCCGG------UCCGGu -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 21190 | 0.72 | 0.096553 |
Target: 5'- cGGACGGC-C-UGGCCGcCCAGGCUg -3' miRNA: 3'- aCCUGCCGcGuACUGGCcGGUCCGGu -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 30405 | 0.72 | 0.102105 |
Target: 5'- -aGAUGGCGUcgGuGCCGcCCAGGCCAg -3' miRNA: 3'- acCUGCCGCGuaC-UGGCcGGUCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 2310 | 0.71 | 0.104992 |
Target: 5'- cGcGGCGGCGCcggagcUGACCGGCUAcGCCu -3' miRNA: 3'- aC-CUGCCGCGu-----ACUGGCCGGUcCGGu -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 32768 | 0.71 | 0.120615 |
Target: 5'- cGGAUcugGGCGCu--GCCGGUguGGCCGg -3' miRNA: 3'- aCCUG---CCGCGuacUGGCCGguCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 21255 | 0.7 | 0.134643 |
Target: 5'- ---cCGGCaGCcUGGgCGGCCAGGCCGu -3' miRNA: 3'- accuGCCG-CGuACUgGCCGGUCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 20401 | 0.7 | 0.134643 |
Target: 5'- -aGGCGGCGCAgGAucUCGGUCAGaGCCGu -3' miRNA: 3'- acCUGCCGCGUaCU--GGCCGGUC-CGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 6506 | 0.69 | 0.150158 |
Target: 5'- aGGGCGGCGCGgguuACgGGCUcGGUCGa -3' miRNA: 3'- aCCUGCCGCGUac--UGgCCGGuCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 12581 | 0.69 | 0.154283 |
Target: 5'- cUGGuCGGCGCcgGAU--GCCgAGGCCAg -3' miRNA: 3'- -ACCuGCCGCGuaCUGgcCGG-UCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 24383 | 0.69 | 0.158511 |
Target: 5'- uUGGGCaGGCGCuc-GCCGGCCcagacccGGCCc -3' miRNA: 3'- -ACCUG-CCGCGuacUGGCCGGu------CCGGu -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 13963 | 0.68 | 0.181253 |
Target: 5'- aGGGCuucGCGCcgGGucUUGGCCAGGUCAa -3' miRNA: 3'- aCCUGc--CGCGuaCU--GGCCGGUCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 36894 | 0.68 | 0.186136 |
Target: 5'- -cGugGGCGCAccgcaACCGGCugcugCAGGCCGu -3' miRNA: 3'- acCugCCGCGUac---UGGCCG-----GUCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 37333 | 0.68 | 0.188121 |
Target: 5'- aGG--GGCGCGUcGCCacgcugccgacuagcGGCCAGGCCGa -3' miRNA: 3'- aCCugCCGCGUAcUGG---------------CCGGUCCGGU- -5' |
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30567 | 5' | -62.6 | NC_006548.1 | + | 26338 | 0.68 | 0.191134 |
Target: 5'- cUGGAuguCGGUcaGCGUuuCCGGCCGGGUCu -3' miRNA: 3'- -ACCU---GCCG--CGUAcuGGCCGGUCCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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