miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30571 5' -59.5 NC_006548.1 + 18723 0.66 0.394964
Target:  5'- uGGGCAgCCcugcggcgguuGUCGCCAUggcuuucgCAUCGCGCa- -3'
miRNA:   3'- cCCCGU-GG-----------UAGCGGUA--------GUGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 18634 0.66 0.368331
Target:  5'- cGGGCuuCCA-CGCCA--GCUGCGCUc -3'
miRNA:   3'- cCCCGu-GGUaGCGGUagUGGCGCGAc -5'
30571 5' -59.5 NC_006548.1 + 36677 0.66 0.385949
Target:  5'- -uGGCACCGuaUCGaCgCAUCcCCGCGCg- -3'
miRNA:   3'- ccCCGUGGU--AGC-G-GUAGuGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 20520 0.66 0.394964
Target:  5'- uGGGCACUggCaCCGugggugacugcUCGCCGCGCg- -3'
miRNA:   3'- cCCCGUGGuaGcGGU-----------AGUGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 28542 0.67 0.359731
Target:  5'- -cGGCGCCG--GCCAggUCGCgGCGCUa -3'
miRNA:   3'- ccCCGUGGUagCGGU--AGUGgCGCGAc -5'
30571 5' -59.5 NC_006548.1 + 32725 0.67 0.318866
Target:  5'- cGGGGUgacaggcgcaGCgAUCGCCGUUGCucgacucccgaCGUGCUGg -3'
miRNA:   3'- -CCCCG----------UGgUAGCGGUAGUG-----------GCGCGAC- -5'
30571 5' -59.5 NC_006548.1 + 35509 0.67 0.326753
Target:  5'- cGGGguUCAUCGCCuucaccugGUCGCCGgccagGCUGa -3'
miRNA:   3'- cCCCguGGUAGCGG--------UAGUGGCg----CGAC- -5'
30571 5' -59.5 NC_006548.1 + 13005 0.67 0.326753
Target:  5'- -cGGCugCGcCGCaCAgCACCGCGCUc -3'
miRNA:   3'- ccCCGugGUaGCG-GUaGUGGCGCGAc -5'
30571 5' -59.5 NC_006548.1 + 16282 0.67 0.358879
Target:  5'- cGGGCuuuuccaucaauaGCCuccaaaGUCGUUAUUACCGCGCa- -3'
miRNA:   3'- cCCCG-------------UGG------UAGCGGUAGUGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 28281 0.67 0.363154
Target:  5'- aGGGGCugCGggCGUCGUCAacgucaccaaguucgUCGCGgaGg -3'
miRNA:   3'- -CCCCGugGUa-GCGGUAGU---------------GGCGCgaC- -5'
30571 5' -59.5 NC_006548.1 + 23375 0.67 0.350434
Target:  5'- cGGGGUugucaccggguggACCAggGCCAUCGCU-CGCUa -3'
miRNA:   3'- -CCCCG-------------UGGUagCGGUAGUGGcGCGAc -5'
30571 5' -59.5 NC_006548.1 + 8125 0.67 0.326753
Target:  5'- aGGGagGCCGUCGCCga-ACUGCGCc- -3'
miRNA:   3'- cCCCg-UGGUAGCGGuagUGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 12794 0.67 0.315752
Target:  5'- -cGGCACCugagcuguauugcUCGCCAgUGCCGCGCg- -3'
miRNA:   3'- ccCCGUGGu------------AGCGGUaGUGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 37333 0.68 0.303524
Target:  5'- aGGGGCG-CGUCGCCA-CGCUGC-Cg- -3'
miRNA:   3'- -CCCCGUgGUAGCGGUaGUGGCGcGac -5'
30571 5' -59.5 NC_006548.1 + 11689 0.68 0.303524
Target:  5'- -cGGCGCCGcCGCg--CGCCGCGCa- -3'
miRNA:   3'- ccCCGUGGUaGCGguaGUGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 4737 0.68 0.296069
Target:  5'- uGGGCACCAa-GCUuUCcCCGCGCa- -3'
miRNA:   3'- cCCCGUGGUagCGGuAGuGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 20558 0.69 0.25432
Target:  5'- aGGGCACCGUCaccCCAUCcgACgGUGCUu -3'
miRNA:   3'- cCCCGUGGUAGc--GGUAG--UGgCGCGAc -5'
30571 5' -59.5 NC_006548.1 + 20401 0.69 0.235321
Target:  5'- aGGcGGCGCaggAUCucggucagaGCCGUCACCGCGUa- -3'
miRNA:   3'- -CC-CCGUGg--UAG---------CGGUAGUGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 31712 0.69 0.24785
Target:  5'- aGGGGcCGCCAUCcagGCCAUC-CagGCGCa- -3'
miRNA:   3'- -CCCC-GUGGUAG---CGGUAGuGg-CGCGac -5'
30571 5' -59.5 NC_006548.1 + 27522 0.69 0.24785
Target:  5'- aGGGGCugCuguUCGCCGgcaUCGCCG-GUUa -3'
miRNA:   3'- -CCCCGugGu--AGCGGU---AGUGGCgCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.