miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30571 5' -59.5 NC_006548.1 + 36134 1.11 0.000178
Target:  5'- aGGGGCACCAUCGCCAUCACCGCGCUGg -3'
miRNA:   3'- -CCCCGUGGUAGCGGUAGUGGCGCGAC- -5'
30571 5' -59.5 NC_006548.1 + 29415 0.76 0.082596
Target:  5'- aGGGUGCCAUCGgCGagACCGCGCa- -3'
miRNA:   3'- cCCCGUGGUAGCgGUagUGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 17516 0.75 0.100811
Target:  5'- cGGccaGCugCggCGCCAUCGCCGCuGCUGg -3'
miRNA:   3'- -CCc--CGugGuaGCGGUAGUGGCG-CGAC- -5'
30571 5' -59.5 NC_006548.1 + 32410 0.72 0.145036
Target:  5'- -cGGCcaGCCGUCGCCGccguugccguUCGCgGCGCUGc -3'
miRNA:   3'- ccCCG--UGGUAGCGGU----------AGUGgCGCGAC- -5'
30571 5' -59.5 NC_006548.1 + 21396 0.71 0.175639
Target:  5'- uGGGCgucgGCCGUCaGCgCAUCACCGCGagUGa -3'
miRNA:   3'- cCCCG----UGGUAG-CG-GUAGUGGCGCg-AC- -5'
30571 5' -59.5 NC_006548.1 + 23846 0.7 0.223328
Target:  5'- --uGCACU-UCGCCAUCACCGuCGCg- -3'
miRNA:   3'- cccCGUGGuAGCGGUAGUGGC-GCGac -5'
30571 5' -59.5 NC_006548.1 + 11658 0.7 0.223328
Target:  5'- cGGGaGCAUCGUCauGUCAUCGCCGCa--- -3'
miRNA:   3'- -CCC-CGUGGUAG--CGGUAGUGGCGcgac -5'
30571 5' -59.5 NC_006548.1 + 21149 0.7 0.229258
Target:  5'- -cGGCGCCAUCGCCGccCGCCGUa--- -3'
miRNA:   3'- ccCCGUGGUAGCGGUa-GUGGCGcgac -5'
30571 5' -59.5 NC_006548.1 + 20401 0.69 0.235321
Target:  5'- aGGcGGCGCaggAUCucggucagaGCCGUCACCGCGUa- -3'
miRNA:   3'- -CC-CCGUGg--UAG---------CGGUAGUGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 27522 0.69 0.24785
Target:  5'- aGGGGCugCuguUCGCCGgcaUCGCCG-GUUa -3'
miRNA:   3'- -CCCCGugGu--AGCGGU---AGUGGCgCGAc -5'
30571 5' -59.5 NC_006548.1 + 31712 0.69 0.24785
Target:  5'- aGGGGcCGCCAUCcagGCCAUC-CagGCGCa- -3'
miRNA:   3'- -CCCC-GUGGUAG---CGGUAGuGg-CGCGac -5'
30571 5' -59.5 NC_006548.1 + 20558 0.69 0.25432
Target:  5'- aGGGCACCGUCaccCCAUCcgACgGUGCUu -3'
miRNA:   3'- cCCCGUGGUAGc--GGUAG--UGgCGCGAc -5'
30571 5' -59.5 NC_006548.1 + 4737 0.68 0.296069
Target:  5'- uGGGCACCAa-GCUuUCcCCGCGCa- -3'
miRNA:   3'- cCCCGUGGUagCGGuAGuGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 37333 0.68 0.303524
Target:  5'- aGGGGCG-CGUCGCCA-CGCUGC-Cg- -3'
miRNA:   3'- -CCCCGUgGUAGCGGUaGUGGCGcGac -5'
30571 5' -59.5 NC_006548.1 + 11689 0.68 0.303524
Target:  5'- -cGGCGCCGcCGCg--CGCCGCGCa- -3'
miRNA:   3'- ccCCGUGGUaGCGguaGUGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 12794 0.67 0.315752
Target:  5'- -cGGCACCugagcuguauugcUCGCCAgUGCCGCGCg- -3'
miRNA:   3'- ccCCGUGGu------------AGCGGUaGUGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 32725 0.67 0.318866
Target:  5'- cGGGGUgacaggcgcaGCgAUCGCCGUUGCucgacucccgaCGUGCUGg -3'
miRNA:   3'- -CCCCG----------UGgUAGCGGUAGUG-----------GCGCGAC- -5'
30571 5' -59.5 NC_006548.1 + 8125 0.67 0.326753
Target:  5'- aGGGagGCCGUCGCCga-ACUGCGCc- -3'
miRNA:   3'- cCCCg-UGGUAGCGGuagUGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 35509 0.67 0.326753
Target:  5'- cGGGguUCAUCGCCuucaccugGUCGCCGgccagGCUGa -3'
miRNA:   3'- cCCCguGGUAGCGG--------UAGUGGCg----CGAC- -5'
30571 5' -59.5 NC_006548.1 + 13005 0.67 0.326753
Target:  5'- -cGGCugCGcCGCaCAgCACCGCGCUc -3'
miRNA:   3'- ccCCGugGUaGCG-GUaGUGGCGCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.