miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30571 5' -59.5 NC_006548.1 + 29415 0.76 0.082596
Target:  5'- aGGGUGCCAUCGgCGagACCGCGCa- -3'
miRNA:   3'- cCCCGUGGUAGCgGUagUGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 31712 0.69 0.24785
Target:  5'- aGGGGcCGCCAUCcagGCCAUC-CagGCGCa- -3'
miRNA:   3'- -CCCC-GUGGUAG---CGGUAGuGg-CGCGac -5'
30571 5' -59.5 NC_006548.1 + 32410 0.72 0.145036
Target:  5'- -cGGCcaGCCGUCGCCGccguugccguUCGCgGCGCUGc -3'
miRNA:   3'- ccCCG--UGGUAGCGGU----------AGUGgCGCGAC- -5'
30571 5' -59.5 NC_006548.1 + 32725 0.67 0.318866
Target:  5'- cGGGGUgacaggcgcaGCgAUCGCCGUUGCucgacucccgaCGUGCUGg -3'
miRNA:   3'- -CCCCG----------UGgUAGCGGUAGUG-----------GCGCGAC- -5'
30571 5' -59.5 NC_006548.1 + 35509 0.67 0.326753
Target:  5'- cGGGguUCAUCGCCuucaccugGUCGCCGgccagGCUGa -3'
miRNA:   3'- cCCCguGGUAGCGG--------UAGUGGCg----CGAC- -5'
30571 5' -59.5 NC_006548.1 + 36134 1.11 0.000178
Target:  5'- aGGGGCACCAUCGCCAUCACCGCGCUGg -3'
miRNA:   3'- -CCCCGUGGUAGCGGUAGUGGCGCGAC- -5'
30571 5' -59.5 NC_006548.1 + 36677 0.66 0.385949
Target:  5'- -uGGCACCGuaUCGaCgCAUCcCCGCGCg- -3'
miRNA:   3'- ccCCGUGGU--AGC-G-GUAGuGGCGCGac -5'
30571 5' -59.5 NC_006548.1 + 37333 0.68 0.303524
Target:  5'- aGGGGCG-CGUCGCCA-CGCUGC-Cg- -3'
miRNA:   3'- -CCCCGUgGUAGCGGUaGUGGCGcGac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.