Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30571 | 5' | -59.5 | NC_006548.1 | + | 29415 | 0.76 | 0.082596 |
Target: 5'- aGGGUGCCAUCGgCGagACCGCGCa- -3' miRNA: 3'- cCCCGUGGUAGCgGUagUGGCGCGac -5' |
|||||||
30571 | 5' | -59.5 | NC_006548.1 | + | 31712 | 0.69 | 0.24785 |
Target: 5'- aGGGGcCGCCAUCcagGCCAUC-CagGCGCa- -3' miRNA: 3'- -CCCC-GUGGUAG---CGGUAGuGg-CGCGac -5' |
|||||||
30571 | 5' | -59.5 | NC_006548.1 | + | 32410 | 0.72 | 0.145036 |
Target: 5'- -cGGCcaGCCGUCGCCGccguugccguUCGCgGCGCUGc -3' miRNA: 3'- ccCCG--UGGUAGCGGU----------AGUGgCGCGAC- -5' |
|||||||
30571 | 5' | -59.5 | NC_006548.1 | + | 32725 | 0.67 | 0.318866 |
Target: 5'- cGGGGUgacaggcgcaGCgAUCGCCGUUGCucgacucccgaCGUGCUGg -3' miRNA: 3'- -CCCCG----------UGgUAGCGGUAGUG-----------GCGCGAC- -5' |
|||||||
30571 | 5' | -59.5 | NC_006548.1 | + | 35509 | 0.67 | 0.326753 |
Target: 5'- cGGGguUCAUCGCCuucaccugGUCGCCGgccagGCUGa -3' miRNA: 3'- cCCCguGGUAGCGG--------UAGUGGCg----CGAC- -5' |
|||||||
30571 | 5' | -59.5 | NC_006548.1 | + | 36134 | 1.11 | 0.000178 |
Target: 5'- aGGGGCACCAUCGCCAUCACCGCGCUGg -3' miRNA: 3'- -CCCCGUGGUAGCGGUAGUGGCGCGAC- -5' |
|||||||
30571 | 5' | -59.5 | NC_006548.1 | + | 36677 | 0.66 | 0.385949 |
Target: 5'- -uGGCACCGuaUCGaCgCAUCcCCGCGCg- -3' miRNA: 3'- ccCCGUGGU--AGC-G-GUAGuGGCGCGac -5' |
|||||||
30571 | 5' | -59.5 | NC_006548.1 | + | 37333 | 0.68 | 0.303524 |
Target: 5'- aGGGGCG-CGUCGCCA-CGCUGC-Cg- -3' miRNA: 3'- -CCCCGUgGUAGCGGUaGUGGCGcGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home