Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 22318 | 0.69 | 0.54003 |
Target: 5'- cCGAacaUCGguCUGCGcGGUG-GCCAGCGCg -3' miRNA: 3'- aGCUg--AGC--GACGC-UUACuUGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 29634 | 0.66 | 0.732542 |
Target: 5'- -gGGCUCGCaggUGCuGGUGccgcuGCCAGCGg -3' miRNA: 3'- agCUGAGCG---ACGcUUACu----UGGUCGCg -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 29657 | 0.66 | 0.743472 |
Target: 5'- -aGACUgGCUGCGGcucccUGAAUggCAGcCGCa -3' miRNA: 3'- agCUGAgCGACGCUu----ACUUG--GUC-GCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 29884 | 0.7 | 0.496219 |
Target: 5'- -gGGCUgCGCUGCauGAcUGGuCCGGCGCu -3' miRNA: 3'- agCUGA-GCGACG--CUuACUuGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 30598 | 0.67 | 0.676509 |
Target: 5'- gCGGC-CGUUgGCGAA-GAACCAGUaggGCa -3' miRNA: 3'- aGCUGaGCGA-CGCUUaCUUGGUCG---CG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 30859 | 0.7 | 0.495144 |
Target: 5'- -aGAUUCGUuggcugacccaccUGCGAcaGUGAaaccgaGCCAGCGCc -3' miRNA: 3'- agCUGAGCG-------------ACGCU--UACU------UGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 31492 | 0.66 | 0.732542 |
Target: 5'- aUUGGCUCGCUcaacaagcGCGGAgucGAAUaCAGCGg -3' miRNA: 3'- -AGCUGAGCGA--------CGCUUa--CUUG-GUCGCg -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 31842 | 0.69 | 0.551194 |
Target: 5'- uUCaACUCGUUgGCGGAcGcaucuACCAGCGCa -3' miRNA: 3'- -AGcUGAGCGA-CGCUUaCu----UGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 31923 | 0.66 | 0.753206 |
Target: 5'- -gGACUCGaucaCGAcgGAACCgacaccuGGCGCg -3' miRNA: 3'- agCUGAGCgac-GCUuaCUUGG-------UCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 32469 | 0.66 | 0.743472 |
Target: 5'- cCGugUCGa--CGGAUGGACCGccgguaguggacGCGCg -3' miRNA: 3'- aGCugAGCgacGCUUACUUGGU------------CGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 32662 | 0.68 | 0.607881 |
Target: 5'- aCGGCgaUCGCUGCGccUGucaccCCGGCGUu -3' miRNA: 3'- aGCUG--AGCGACGCuuACuu---GGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 32938 | 0.66 | 0.754281 |
Target: 5'- cUGAC-CGCgucgGCGAuucAACUGGCGCg -3' miRNA: 3'- aGCUGaGCGa---CGCUuacUUGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 33594 | 0.67 | 0.687857 |
Target: 5'- uUCaGCUCGCUGaCGucgagGAugCGGCGg -3' miRNA: 3'- -AGcUGAGCGAC-GCuua--CUugGUCGCg -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 33660 | 0.66 | 0.743472 |
Target: 5'- gCGACgUCGCU-CGGccGGAcaacggugcCCAGCGCg -3' miRNA: 3'- aGCUG-AGCGAcGCUuaCUU---------GGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 33879 | 0.71 | 0.433758 |
Target: 5'- cUCGAUUCGCUGUu-GUGuagguCCAGCGg -3' miRNA: 3'- -AGCUGAGCGACGcuUACuu---GGUCGCg -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 35260 | 0.67 | 0.676509 |
Target: 5'- cUCGACUgGCgGCGAugGUGGgcggccugguACCuGCGUu -3' miRNA: 3'- -AGCUGAgCGaCGCU--UACU----------UGGuCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 35855 | 0.71 | 0.47492 |
Target: 5'- cCGGCgUGCccgUGCGAAgaauGCCGGCGCg -3' miRNA: 3'- aGCUGaGCG---ACGCUUacu-UGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 36605 | 0.67 | 0.707009 |
Target: 5'- gCGguGCUCGC-GCGGG-GAugcgucgauacgguGCCAGCGCc -3' miRNA: 3'- aGC--UGAGCGaCGCUUaCU--------------UGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 36785 | 1.12 | 0.000724 |
Target: 5'- gUCGACUCGCUGCGAAUGAACCAGCGCc -3' miRNA: 3'- -AGCUGAGCGACGCUUACUUGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 36814 | 0.69 | 0.58507 |
Target: 5'- -aGGCUCuCUGCGAGcgucgccGAGCUGGUGCg -3' miRNA: 3'- agCUGAGcGACGCUUa------CUUGGUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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