miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30573 5' -52.9 NC_006548.1 + 853 0.67 0.676509
Target:  5'- gCGGCUCGCuUGCuGGgcuGUGGuuGCCAGCccagGCg -3'
miRNA:   3'- aGCUGAGCG-ACG-CU---UACU--UGGUCG----CG- -5'
30573 5' -52.9 NC_006548.1 + 1165 0.72 0.423795
Target:  5'- -aGGCUCGCUcGCGAAUuGGGCguCAGCGa -3'
miRNA:   3'- agCUGAGCGA-CGCUUA-CUUG--GUCGCg -5'
30573 5' -52.9 NC_006548.1 + 1681 0.7 0.496219
Target:  5'- gCGAgCUUGCUgGCGAuccaGAugCAGCGUa -3'
miRNA:   3'- aGCU-GAGCGA-CGCUua--CUugGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 3686 0.69 0.58507
Target:  5'- aUGACgcugagCGCcgagGCG-GUGAACUGGCGCu -3'
miRNA:   3'- aGCUGa-----GCGa---CGCuUACUUGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 5148 0.73 0.358075
Target:  5'- aCGGCUuucuUGCggugGUGggUGAGuCCGGCGCc -3'
miRNA:   3'- aGCUGA----GCGa---CGCuuACUU-GGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 6401 0.66 0.743472
Target:  5'- uUCGACUCGaacuUGCGcucGAUGAuguuCCgGGCGUu -3'
miRNA:   3'- -AGCUGAGCg---ACGC---UUACUu---GG-UCGCG- -5'
30573 5' -52.9 NC_006548.1 + 6956 0.66 0.764955
Target:  5'- aUCGACaUCGg-GCGGAUcucuCCGGUGCg -3'
miRNA:   3'- -AGCUG-AGCgaCGCUUAcuu-GGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 7430 0.67 0.662833
Target:  5'- gUCGaACUCGUUGCGuaccuccuccaggAGUGAuuccaggugaacgAUCAGUGCa -3'
miRNA:   3'- -AGC-UGAGCGACGC-------------UUACU-------------UGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 9420 0.75 0.269263
Target:  5'- gCGACUCagGCUGUGuuUGAAcagccguCCAGCGCu -3'
miRNA:   3'- aGCUGAG--CGACGCuuACUU-------GGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 10121 0.66 0.754281
Target:  5'- cUCGcGCUUGCUGCG--UGGGCCAaCGa -3'
miRNA:   3'- -AGC-UGAGCGACGCuuACUUGGUcGCg -5'
30573 5' -52.9 NC_006548.1 + 12931 0.69 0.573723
Target:  5'- cUGGCUCGCgcugaGCGcGGUGcuGugCGGCGCa -3'
miRNA:   3'- aGCUGAGCGa----CGC-UUAC--UugGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 13156 0.7 0.496219
Target:  5'- gCGACcUGCUGCuuguacUGGACCAGgGCg -3'
miRNA:   3'- aGCUGaGCGACGcuu---ACUUGGUCgCG- -5'
30573 5' -52.9 NC_006548.1 + 13379 0.74 0.292138
Target:  5'- aUCGGCgcgCGCuccUGCGGcgGGcaaACCGGCGCc -3'
miRNA:   3'- -AGCUGa--GCG---ACGCUuaCU---UGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 14086 0.67 0.687857
Target:  5'- --aGCUCGCgGCGGAUcu-CCAGCGg -3'
miRNA:   3'- agcUGAGCGaCGCUUAcuuGGUCGCg -5'
30573 5' -52.9 NC_006548.1 + 16752 0.7 0.489783
Target:  5'- aCGGCUCccccucgaacauguuGUUGgGggUGAGCaGGCGCa -3'
miRNA:   3'- aGCUGAG---------------CGACgCuuACUUGgUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 17200 0.67 0.699147
Target:  5'- cCGGCcCGUUGgcugacCGAGUGGAacuuccCCGGCGCg -3'
miRNA:   3'- aGCUGaGCGAC------GCUUACUU------GGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 17582 0.66 0.754281
Target:  5'- --uGCUUGcCUGCucGAUGAGCguGCGCa -3'
miRNA:   3'- agcUGAGC-GACGc-UUACUUGguCGCG- -5'
30573 5' -52.9 NC_006548.1 + 17880 0.66 0.736928
Target:  5'- gUCGGCgcgauuugccccggCGCUGaCGAA-GGACCGGuCGUu -3'
miRNA:   3'- -AGCUGa-------------GCGAC-GCUUaCUUGGUC-GCG- -5'
30573 5' -52.9 NC_006548.1 + 20537 0.67 0.687857
Target:  5'- cCG-C-CGCUGCGGAaGAGCCgcAGgGCa -3'
miRNA:   3'- aGCuGaGCGACGCUUaCUUGG--UCgCG- -5'
30573 5' -52.9 NC_006548.1 + 21815 0.66 0.754281
Target:  5'- gUCGAUaucCGcCUGCGGc---ACCGGCGCg -3'
miRNA:   3'- -AGCUGa--GC-GACGCUuacuUGGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.