miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30573 5' -52.9 NC_006548.1 + 10121 0.66 0.754281
Target:  5'- cUCGcGCUUGCUGCG--UGGGCCAaCGa -3'
miRNA:   3'- -AGC-UGAGCGACGCuuACUUGGUcGCg -5'
30573 5' -52.9 NC_006548.1 + 20537 0.67 0.687857
Target:  5'- cCG-C-CGCUGCGGAaGAGCCgcAGgGCa -3'
miRNA:   3'- aGCuGaGCGACGCUUaCUUGG--UCgCG- -5'
30573 5' -52.9 NC_006548.1 + 17200 0.67 0.699147
Target:  5'- cCGGCcCGUUGgcugacCGAGUGGAacuuccCCGGCGCg -3'
miRNA:   3'- aGCUGaGCGAC------GCUUACUU------GGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 36605 0.67 0.707009
Target:  5'- gCGguGCUCGC-GCGGG-GAugcgucgauacgguGCCAGCGCc -3'
miRNA:   3'- aGC--UGAGCGaCGCUUaCU--------------UGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 29634 0.66 0.732542
Target:  5'- -gGGCUCGCaggUGCuGGUGccgcuGCCAGCGg -3'
miRNA:   3'- agCUGAGCG---ACGcUUACu----UGGUCGCg -5'
30573 5' -52.9 NC_006548.1 + 31492 0.66 0.732542
Target:  5'- aUUGGCUCGCUcaacaagcGCGGAgucGAAUaCAGCGg -3'
miRNA:   3'- -AGCUGAGCGA--------CGCUUa--CUUG-GUCGCg -5'
30573 5' -52.9 NC_006548.1 + 6401 0.66 0.743472
Target:  5'- uUCGACUCGaacuUGCGcucGAUGAuguuCCgGGCGUu -3'
miRNA:   3'- -AGCUGAGCg---ACGC---UUACUu---GG-UCGCG- -5'
30573 5' -52.9 NC_006548.1 + 32469 0.66 0.743472
Target:  5'- cCGugUCGa--CGGAUGGACCGccgguaguggacGCGCg -3'
miRNA:   3'- aGCugAGCgacGCUUACUUGGU------------CGCG- -5'
30573 5' -52.9 NC_006548.1 + 31923 0.66 0.753206
Target:  5'- -gGACUCGaucaCGAcgGAACCgacaccuGGCGCg -3'
miRNA:   3'- agCUGAGCgac-GCUuaCUUGG-------UCGCG- -5'
30573 5' -52.9 NC_006548.1 + 35260 0.67 0.676509
Target:  5'- cUCGACUgGCgGCGAugGUGGgcggccugguACCuGCGUu -3'
miRNA:   3'- -AGCUGAgCGaCGCU--UACU----------UGGuCGCG- -5'
30573 5' -52.9 NC_006548.1 + 853 0.67 0.676509
Target:  5'- gCGGCUCGCuUGCuGGgcuGUGGuuGCCAGCccagGCg -3'
miRNA:   3'- aGCUGAGCG-ACG-CU---UACU--UGGUCG----CG- -5'
30573 5' -52.9 NC_006548.1 + 7430 0.67 0.662833
Target:  5'- gUCGaACUCGUUGCGuaccuccuccaggAGUGAuuccaggugaacgAUCAGUGCa -3'
miRNA:   3'- -AGC-UGAGCGACGC-------------UUACU-------------UGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 9420 0.75 0.269263
Target:  5'- gCGACUCagGCUGUGuuUGAAcagccguCCAGCGCu -3'
miRNA:   3'- aGCUGAG--CGACGCuuACUU-------GGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 35855 0.71 0.47492
Target:  5'- cCGGCgUGCccgUGCGAAgaauGCCGGCGCg -3'
miRNA:   3'- aGCUGaGCG---ACGCUUacu-UGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 29884 0.7 0.496219
Target:  5'- -gGGCUgCGCUGCauGAcUGGuCCGGCGCu -3'
miRNA:   3'- agCUGA-GCGACG--CUuACUuGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 1681 0.7 0.496219
Target:  5'- gCGAgCUUGCUgGCGAuccaGAugCAGCGUa -3'
miRNA:   3'- aGCU-GAGCGA-CGCUua--CUugGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 22318 0.69 0.54003
Target:  5'- cCGAacaUCGguCUGCGcGGUG-GCCAGCGCg -3'
miRNA:   3'- aGCUg--AGC--GACGC-UUACuUGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 12931 0.69 0.573723
Target:  5'- cUGGCUCGCgcugaGCGcGGUGcuGugCGGCGCa -3'
miRNA:   3'- aGCUGAGCGa----CGC-UUAC--UugGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 32662 0.68 0.607881
Target:  5'- aCGGCgaUCGCUGCGccUGucaccCCGGCGUu -3'
miRNA:   3'- aGCUG--AGCGACGCuuACuu---GGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 37692 0.67 0.661691
Target:  5'- aUCGACgUCGCUGCaucGAacacgcucaucacaGUGccggcGACCGGCGUc -3'
miRNA:   3'- -AGCUG-AGCGACG---CU--------------UAC-----UUGGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.