miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30573 5' -52.9 NC_006548.1 + 36785 1.12 0.000724
Target:  5'- gUCGACUCGCUGCGAAUGAACCAGCGCc -3'
miRNA:   3'- -AGCUGAGCGACGCUUACUUGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 36841 0.76 0.236082
Target:  5'- uUC-AUUCGCaGCGAGUcGACCGGCGCg -3'
miRNA:   3'- -AGcUGAGCGaCGCUUAcUUGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 9420 0.75 0.269263
Target:  5'- gCGACUCagGCUGUGuuUGAAcagccguCCAGCGCu -3'
miRNA:   3'- aGCUGAG--CGACGCuuACUU-------GGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 13379 0.74 0.292138
Target:  5'- aUCGGCgcgCGCuccUGCGGcgGGcaaACCGGCGCc -3'
miRNA:   3'- -AGCUGa--GCG---ACGCUuaCU---UGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 5148 0.73 0.358075
Target:  5'- aCGGCUuucuUGCggugGUGggUGAGuCCGGCGCc -3'
miRNA:   3'- aGCUGA----GCGa---CGCuuACUU-GGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 1165 0.72 0.423795
Target:  5'- -aGGCUCGCUcGCGAAUuGGGCguCAGCGa -3'
miRNA:   3'- agCUGAGCGA-CGCUUA-CUUG--GUCGCg -5'
30573 5' -52.9 NC_006548.1 + 33879 0.71 0.433758
Target:  5'- cUCGAUUCGCUGUu-GUGuagguCCAGCGg -3'
miRNA:   3'- -AGCUGAGCGACGcuUACuu---GGUCGCg -5'
30573 5' -52.9 NC_006548.1 + 35855 0.71 0.47492
Target:  5'- cCGGCgUGCccgUGCGAAgaauGCCGGCGCg -3'
miRNA:   3'- aGCUGaGCG---ACGCUUacu-UGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 16752 0.7 0.489783
Target:  5'- aCGGCUCccccucgaacauguuGUUGgGggUGAGCaGGCGCa -3'
miRNA:   3'- aGCUGAG---------------CGACgCuuACUUGgUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 30859 0.7 0.495144
Target:  5'- -aGAUUCGUuggcugacccaccUGCGAcaGUGAaaccgaGCCAGCGCc -3'
miRNA:   3'- agCUGAGCG-------------ACGCU--UACU------UGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 1681 0.7 0.496219
Target:  5'- gCGAgCUUGCUgGCGAuccaGAugCAGCGUa -3'
miRNA:   3'- aGCU-GAGCGA-CGCUua--CUugGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 29884 0.7 0.496219
Target:  5'- -gGGCUgCGCUGCauGAcUGGuCCGGCGCu -3'
miRNA:   3'- agCUGA-GCGACG--CUuACUuGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 13156 0.7 0.496219
Target:  5'- gCGACcUGCUGCuuguacUGGACCAGgGCg -3'
miRNA:   3'- aGCUGaGCGACGcuu---ACUUGGUCgCG- -5'
30573 5' -52.9 NC_006548.1 + 22318 0.69 0.54003
Target:  5'- cCGAacaUCGguCUGCGcGGUG-GCCAGCGCg -3'
miRNA:   3'- aGCUg--AGC--GACGC-UUACuUGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 31842 0.69 0.551194
Target:  5'- uUCaACUCGUUgGCGGAcGcaucuACCAGCGCa -3'
miRNA:   3'- -AGcUGAGCGA-CGCUUaCu----UGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 12931 0.69 0.573723
Target:  5'- cUGGCUCGCgcugaGCGcGGUGcuGugCGGCGCa -3'
miRNA:   3'- aGCUGAGCGa----CGC-UUAC--UugGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 36814 0.69 0.58507
Target:  5'- -aGGCUCuCUGCGAGcgucgccGAGCUGGUGCg -3'
miRNA:   3'- agCUGAGcGACGCUUa------CUUGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 3686 0.69 0.58507
Target:  5'- aUGACgcugagCGCcgagGCG-GUGAACUGGCGCu -3'
miRNA:   3'- aGCUGa-----GCGa---CGCuUACUUGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 32662 0.68 0.607881
Target:  5'- aCGGCgaUCGCUGCGccUGucaccCCGGCGUu -3'
miRNA:   3'- aGCUG--AGCGACGCuuACuu---GGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 37692 0.67 0.661691
Target:  5'- aUCGACgUCGCUGCaucGAacacgcucaucacaGUGccggcGACCGGCGUc -3'
miRNA:   3'- -AGCUG-AGCGACG---CU--------------UAC-----UUGGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.