miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30574 3' -61.7 NC_006548.1 + 27594 0.66 0.277527
Target:  5'- gGCCGUAACCGGCga-UGCcGG-CGAa -3'
miRNA:   3'- -UGGCGUUGGCCGacgACGuCCgGCUa -5'
30574 3' -61.7 NC_006548.1 + 7406 0.66 0.277527
Target:  5'- gUCGCGACCaagcuCUGCagGCAGGUCGAa -3'
miRNA:   3'- uGGCGUUGGcc---GACGa-CGUCCGGCUa -5'
30574 3' -61.7 NC_006548.1 + 36440 0.66 0.2637
Target:  5'- -aCGCGGCUGaGCaGCgcguaguucaucUGCAGGCCGGa -3'
miRNA:   3'- ugGCGUUGGC-CGaCG------------ACGUCCGGCUa -5'
30574 3' -61.7 NC_006548.1 + 9573 0.66 0.2637
Target:  5'- cACCagaGCAGCCucCUGCUGguGGaCCGAa -3'
miRNA:   3'- -UGG---CGUUGGccGACGACguCC-GGCUa -5'
30574 3' -61.7 NC_006548.1 + 27502 0.66 0.263023
Target:  5'- gGCUGCAAUUcgacggguccaggGGCUGCUGUucGCCGGc -3'
miRNA:   3'- -UGGCGUUGG-------------CCGACGACGucCGGCUa -5'
30574 3' -61.7 NC_006548.1 + 29664 0.66 0.261002
Target:  5'- gGCCGCAagACUGGCUGCggcucccugaaugGCAG-CCGc- -3'
miRNA:   3'- -UGGCGU--UGGCCGACGa------------CGUCcGGCua -5'
30574 3' -61.7 NC_006548.1 + 27244 0.66 0.256998
Target:  5'- gGCgGCAGCCaaGGCUGCUGCugaaacaGCCa-- -3'
miRNA:   3'- -UGgCGUUGG--CCGACGACGuc-----CGGcua -5'
30574 3' -61.7 NC_006548.1 + 36063 0.66 0.256998
Target:  5'- uUCGCAGCCGGaaGC-GCGGGaUCGAa -3'
miRNA:   3'- uGGCGUUGGCCgaCGaCGUCC-GGCUa -5'
30574 3' -61.7 NC_006548.1 + 9341 0.66 0.256998
Target:  5'- cAUCGCGAuCUGGCaggggUGCUGCGGcauguuGCCGAg -3'
miRNA:   3'- -UGGCGUU-GGCCG-----ACGACGUC------CGGCUa -5'
30574 3' -61.7 NC_006548.1 + 9939 0.66 0.255015
Target:  5'- cACCGCca-UGGCcGCUGCAaccaaagcccucacGGCCGAc -3'
miRNA:   3'- -UGGCGuugGCCGaCGACGU--------------CCGGCUa -5'
30574 3' -61.7 NC_006548.1 + 34140 0.66 0.250437
Target:  5'- uCUGCAcCCGGCUGUcgGCcGGCCa-- -3'
miRNA:   3'- uGGCGUuGGCCGACGa-CGuCCGGcua -5'
30574 3' -61.7 NC_006548.1 + 33324 0.67 0.237729
Target:  5'- -gCGCAGCCuGCUGUacgcccUGCGuGGCCGGc -3'
miRNA:   3'- ugGCGUUGGcCGACG------ACGU-CCGGCUa -5'
30574 3' -61.7 NC_006548.1 + 21356 0.67 0.219685
Target:  5'- cGCCGUacucGACCGGC-GC--CAGGCCGGa -3'
miRNA:   3'- -UGGCG----UUGGCCGaCGacGUCCGGCUa -5'
30574 3' -61.7 NC_006548.1 + 19312 0.67 0.219685
Target:  5'- cGCCGCAgguagGCCGGCgacaaggGCUGCcaAGGCg--- -3'
miRNA:   3'- -UGGCGU-----UGGCCGa------CGACG--UCCGgcua -5'
30574 3' -61.7 NC_006548.1 + 29561 0.67 0.219685
Target:  5'- cACCGCAGgCGGaacuCUGguGGCUGGUg -3'
miRNA:   3'- -UGGCGUUgGCCgac-GACguCCGGCUA- -5'
30574 3' -61.7 NC_006548.1 + 556 0.67 0.208314
Target:  5'- cGCCGCcauccuuUCGGCaGCUGUuccAGGCCGGc -3'
miRNA:   3'- -UGGCGuu-----GGCCGaCGACG---UCCGGCUa -5'
30574 3' -61.7 NC_006548.1 + 32264 0.67 0.208314
Target:  5'- aACCGCAuCUGGCUGauucCuGGCCGAUu -3'
miRNA:   3'- -UGGCGUuGGCCGACgac-GuCCGGCUA- -5'
30574 3' -61.7 NC_006548.1 + 15404 0.68 0.197456
Target:  5'- aGCUGCAGCaga-UGCUGCcGGCCGAc -3'
miRNA:   3'- -UGGCGUUGgccgACGACGuCCGGCUa -5'
30574 3' -61.7 NC_006548.1 + 25865 0.68 0.197456
Target:  5'- cACCGCcuGCUGGCccGC-GCGGGCCGu- -3'
miRNA:   3'- -UGGCGu-UGGCCGa-CGaCGUCCGGCua -5'
30574 3' -61.7 NC_006548.1 + 7255 0.68 0.187094
Target:  5'- cGCUGCcccuGACCGGCgcucuguaGCUGCcGGUCGAg -3'
miRNA:   3'- -UGGCG----UUGGCCGa-------CGACGuCCGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.