Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30584 | 5' | -51.3 | NC_006549.1 | + | 20079 | 1.11 | 0.005009 |
Target: 5'- aAGCGCAAAACGCCCUACGAAACGCACa -3' miRNA: 3'- -UCGCGUUUUGCGGGAUGCUUUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 97757 | 0.75 | 0.665944 |
Target: 5'- uGGUGCAAGACGCggUGCuGGGCGCGCa -3' miRNA: 3'- -UCGCGUUUUGCGggAUGcUUUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 130188 | 0.72 | 0.807599 |
Target: 5'- uGCGCcAGAUGCUCggACGAAACGguCa -3' miRNA: 3'- uCGCGuUUUGCGGGa-UGCUUUGCguG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 69252 | 0.72 | 0.807599 |
Target: 5'- -cCGCAGAGCGCCCUcACGGAAUcCAg -3' miRNA: 3'- ucGCGUUUUGCGGGA-UGCUUUGcGUg -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 18698 | 0.72 | 0.816743 |
Target: 5'- cGCGCuuGACGCCgU-CuuGACGCACg -3' miRNA: 3'- uCGCGuuUUGCGGgAuGcuUUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 129966 | 0.72 | 0.83447 |
Target: 5'- uGGUGCcc-AgGCCCUACGAAcgcaggGCGUACa -3' miRNA: 3'- -UCGCGuuuUgCGGGAUGCUU------UGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 44478 | 0.7 | 0.896037 |
Target: 5'- uGCGCGucGCGCUccccauccggcagCUGCGA-ACGCGCu -3' miRNA: 3'- uCGCGUuuUGCGG-------------GAUGCUuUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 85886 | 0.7 | 0.903421 |
Target: 5'- gAGCGCGAAcggaGCGUCgUGCuuguaGAACGCGCc -3' miRNA: 3'- -UCGCGUUU----UGCGGgAUGc----UUUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 3815 | 0.69 | 0.91605 |
Target: 5'- cGCGCAcguGAACGCCgugGCGAAAUgGUGCg -3' miRNA: 3'- uCGCGU---UUUGCGGga-UGCUUUG-CGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 66301 | 0.69 | 0.91605 |
Target: 5'- uGCGCAucaccGCGCUCUugGucGCGaCGCg -3' miRNA: 3'- uCGCGUuu---UGCGGGAugCuuUGC-GUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 54133 | 0.69 | 0.92983 |
Target: 5'- uGCGCGAGgucaggcccGCGCCCggUAUGGAgcaacccaaauuacuACGCACc -3' miRNA: 3'- uCGCGUUU---------UGCGGG--AUGCUU---------------UGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 23432 | 0.69 | 0.93818 |
Target: 5'- aAGCGCAAacguGACGUguuuCCUAgGugGCGCAUg -3' miRNA: 3'- -UCGCGUU----UUGCG----GGAUgCuuUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 131670 | 0.69 | 0.94306 |
Target: 5'- aAGCGCGcucacCGCCCaugcgUACGGAACGUg- -3' miRNA: 3'- -UCGCGUuuu--GCGGG-----AUGCUUUGCGug -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 23763 | 0.68 | 0.952049 |
Target: 5'- uGCGCAGAuaGCGCa----GAGACGUACa -3' miRNA: 3'- uCGCGUUU--UGCGggaugCUUUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 10473 | 0.68 | 0.956164 |
Target: 5'- uAG-GCAAGACGCgCUAaacAACGCGCg -3' miRNA: 3'- -UCgCGUUUUGCGgGAUgcuUUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 136354 | 0.68 | 0.963659 |
Target: 5'- uGCGCGAGA-GCCuCUGC---GCGCGCc -3' miRNA: 3'- uCGCGUUUUgCGG-GAUGcuuUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 127013 | 0.68 | 0.963659 |
Target: 5'- uAGCGUGcgGCGCUacuauCUGCGcuGAAUGCGCa -3' miRNA: 3'- -UCGCGUuuUGCGG-----GAUGC--UUUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 51744 | 0.68 | 0.963659 |
Target: 5'- gAGCGCucguguuuGCGCCCagguuUGAAACGC-Cg -3' miRNA: 3'- -UCGCGuuu-----UGCGGGau---GCUUUGCGuG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 23854 | 0.67 | 0.970209 |
Target: 5'- cGGCGUAu--UGCCagaaUACGAAaacgacACGCGCg -3' miRNA: 3'- -UCGCGUuuuGCGGg---AUGCUU------UGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 30950 | 0.67 | 0.970209 |
Target: 5'- uAGCGCAcaauauaacgcAAACGUCCguggaagGCGgcAUGUACa -3' miRNA: 3'- -UCGCGU-----------UUUGCGGGa------UGCuuUGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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