miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30584 5' -51.3 NC_006549.1 + 3815 0.69 0.91605
Target:  5'- cGCGCAcguGAACGCCgugGCGAAAUgGUGCg -3'
miRNA:   3'- uCGCGU---UUUGCGGga-UGCUUUG-CGUG- -5'
30584 5' -51.3 NC_006549.1 + 10448 0.67 0.975868
Target:  5'- cGCGCGgaAGACGCUCUGagaAAACGC-Ca -3'
miRNA:   3'- uCGCGU--UUUGCGGGAUgc-UUUGCGuG- -5'
30584 5' -51.3 NC_006549.1 + 10473 0.68 0.956164
Target:  5'- uAG-GCAAGACGCgCUAaacAACGCGCg -3'
miRNA:   3'- -UCgCGUUUUGCGgGAUgcuUUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 18698 0.72 0.816743
Target:  5'- cGCGCuuGACGCCgU-CuuGACGCACg -3'
miRNA:   3'- uCGCGuuUUGCGGgAuGcuUUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 20079 1.11 0.005009
Target:  5'- aAGCGCAAAACGCCCUACGAAACGCACa -3'
miRNA:   3'- -UCGCGUUUUGCGGGAUGCUUUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 20119 0.66 0.984765
Target:  5'- -aCGgAAAcCGCCCU-CGAaGACGCGCu -3'
miRNA:   3'- ucGCgUUUuGCGGGAuGCU-UUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 23432 0.69 0.93818
Target:  5'- aAGCGCAAacguGACGUguuuCCUAgGugGCGCAUg -3'
miRNA:   3'- -UCGCGUU----UUGCG----GGAUgCuuUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 23763 0.68 0.952049
Target:  5'- uGCGCAGAuaGCGCa----GAGACGUACa -3'
miRNA:   3'- uCGCGUUU--UGCGggaugCUUUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 23854 0.67 0.970209
Target:  5'- cGGCGUAu--UGCCagaaUACGAAaacgacACGCGCg -3'
miRNA:   3'- -UCGCGUuuuGCGGg---AUGCUU------UGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 30080 0.67 0.973146
Target:  5'- uAG-GCAAAGCGCgCaa-GAAGCGUACg -3'
miRNA:   3'- -UCgCGUUUUGCGgGaugCUUUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 30950 0.67 0.970209
Target:  5'- uAGCGCAcaauauaacgcAAACGUCCguggaagGCGgcAUGUACa -3'
miRNA:   3'- -UCGCGU-----------UUUGCGGGa------UGCuuUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 36715 0.66 0.982822
Target:  5'- gAGaCGCAgaaccccgcAGACGUCCUcucacgucaaACGAAAUGUGCg -3'
miRNA:   3'- -UC-GCGU---------UUUGCGGGA----------UGCUUUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 44478 0.7 0.896037
Target:  5'- uGCGCGucGCGCUccccauccggcagCUGCGA-ACGCGCu -3'
miRNA:   3'- uCGCGUuuUGCGG-------------GAUGCUuUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 47949 0.67 0.973146
Target:  5'- cAGCGCAAAACGUgCUGgaAGACGgAUc -3'
miRNA:   3'- -UCGCGUUUUGCGgGAUgcUUUGCgUG- -5'
30584 5' -51.3 NC_006549.1 + 51744 0.68 0.963659
Target:  5'- gAGCGCucguguuuGCGCCCagguuUGAAACGC-Cg -3'
miRNA:   3'- -UCGCGuuu-----UGCGGGau---GCUUUGCGuG- -5'
30584 5' -51.3 NC_006549.1 + 54133 0.69 0.92983
Target:  5'- uGCGCGAGgucaggcccGCGCCCggUAUGGAgcaacccaaauuacuACGCACc -3'
miRNA:   3'- uCGCGUUU---------UGCGGG--AUGCUU---------------UGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 57017 0.66 0.982822
Target:  5'- cGCGCcuGACGCCacaaGAGAC-CACa -3'
miRNA:   3'- uCGCGuuUUGCGGgaugCUUUGcGUG- -5'
30584 5' -51.3 NC_006549.1 + 60475 0.66 0.982822
Target:  5'- cGCcCGAGGCGCCC-GCGAcGGCGUugGCg -3'
miRNA:   3'- uCGcGUUUUGCGGGaUGCU-UUGCG--UG- -5'
30584 5' -51.3 NC_006549.1 + 64224 0.66 0.988146
Target:  5'- -aUGCcgGAGACGCCCgaaaugUACGcAGCGUACg -3'
miRNA:   3'- ucGCG--UUUUGCGGG------AUGCuUUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 66301 0.69 0.91605
Target:  5'- uGCGCAucaccGCGCUCUugGucGCGaCGCg -3'
miRNA:   3'- uCGCGUuu---UGCGGGAugCuuUGC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.