Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30584 | 5' | -51.3 | NC_006549.1 | + | 136354 | 0.68 | 0.963659 |
Target: 5'- uGCGCGAGA-GCCuCUGC---GCGCGCc -3' miRNA: 3'- uCGCGUUUUgCGG-GAUGcuuUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 131670 | 0.69 | 0.94306 |
Target: 5'- aAGCGCGcucacCGCCCaugcgUACGGAACGUg- -3' miRNA: 3'- -UCGCGUuuu--GCGGG-----AUGCUUUGCGug -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 130616 | 0.66 | 0.986537 |
Target: 5'- uGGUGuCGGAACGUCUggaAgGAGugGCGCu -3' miRNA: 3'- -UCGC-GUUUUGCGGGa--UgCUUugCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 130188 | 0.72 | 0.807599 |
Target: 5'- uGCGCcAGAUGCUCggACGAAACGguCa -3' miRNA: 3'- uCGCGuUUUGCGGGa-UGCUUUGCguG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 129966 | 0.72 | 0.83447 |
Target: 5'- uGGUGCcc-AgGCCCUACGAAcgcaggGCGUACa -3' miRNA: 3'- -UCGCGuuuUgCGGGAUGCUU------UGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 127013 | 0.68 | 0.963659 |
Target: 5'- uAGCGUGcgGCGCUacuauCUGCGcuGAAUGCGCa -3' miRNA: 3'- -UCGCGUuuUGCGG-----GAUGC--UUUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 126934 | 0.66 | 0.982822 |
Target: 5'- uGGCGUGAAauacACGCCCgaaGAcgUGUACg -3' miRNA: 3'- -UCGCGUUU----UGCGGGaugCUuuGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 125231 | 0.66 | 0.988146 |
Target: 5'- uGCGgAGAcUGCCCcguUACGAuccAUGCACa -3' miRNA: 3'- uCGCgUUUuGCGGG---AUGCUu--UGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 120096 | 0.66 | 0.986367 |
Target: 5'- cGGCGgucuaaaCGGAuucGCGCCCgaauuUGCGuuACGCGCg -3' miRNA: 3'- -UCGC-------GUUU---UGCGGG-----AUGCuuUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 97757 | 0.75 | 0.665944 |
Target: 5'- uGGUGCAAGACGCggUGCuGGGCGCGCa -3' miRNA: 3'- -UCGCGUUUUGCGggAUGcUUUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 96461 | 0.66 | 0.984765 |
Target: 5'- cGCGCAAuccauaGGCGCCaaAC-AGACGCAg -3' miRNA: 3'- uCGCGUU------UUGCGGgaUGcUUUGCGUg -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 90187 | 0.66 | 0.982822 |
Target: 5'- -aCGaAAAGCGCCCUAagaGGAugGCGa -3' miRNA: 3'- ucGCgUUUUGCGGGAUg--CUUugCGUg -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 86173 | 0.66 | 0.98495 |
Target: 5'- gAGCGUAcGACGCCUcacaccaaucgcccgACGAGGgGCAg -3' miRNA: 3'- -UCGCGUuUUGCGGGa--------------UGCUUUgCGUg -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 85886 | 0.7 | 0.903421 |
Target: 5'- gAGCGCGAAcggaGCGUCgUGCuuguaGAACGCGCc -3' miRNA: 3'- -UCGCGUUU----UGCGGgAUGc----UUUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 73349 | 0.66 | 0.980697 |
Target: 5'- cGCGCcuuGCGCUCUgagucauccacACGuuACGUACg -3' miRNA: 3'- uCGCGuuuUGCGGGA-----------UGCuuUGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 73256 | 0.66 | 0.984765 |
Target: 5'- gGGCGCAucagacACGCCUUuuCG-GACGCAa -3' miRNA: 3'- -UCGCGUuu----UGCGGGAu-GCuUUGCGUg -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 72049 | 0.67 | 0.978382 |
Target: 5'- -cUGCGAAACcCCCgcCGAAcccACGCACg -3' miRNA: 3'- ucGCGUUUUGcGGGauGCUU---UGCGUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 69252 | 0.72 | 0.807599 |
Target: 5'- -cCGCAGAGCGCCCUcACGGAAUcCAg -3' miRNA: 3'- ucGCGUUUUGCGGGA-UGCUUUGcGUg -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 66301 | 0.69 | 0.91605 |
Target: 5'- uGCGCAucaccGCGCUCUugGucGCGaCGCg -3' miRNA: 3'- uCGCGUuu---UGCGGGAugCuuUGC-GUG- -5' |
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30584 | 5' | -51.3 | NC_006549.1 | + | 64224 | 0.66 | 0.988146 |
Target: 5'- -aUGCcgGAGACGCCCgaaaugUACGcAGCGUACg -3' miRNA: 3'- ucGCG--UUUUGCGGG------AUGCuUUGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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