miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30584 5' -51.3 NC_006549.1 + 69252 0.72 0.807599
Target:  5'- -cCGCAGAGCGCCCUcACGGAAUcCAg -3'
miRNA:   3'- ucGCGUUUUGCGGGA-UGCUUUGcGUg -5'
30584 5' -51.3 NC_006549.1 + 72049 0.67 0.978382
Target:  5'- -cUGCGAAACcCCCgcCGAAcccACGCACg -3'
miRNA:   3'- ucGCGUUUUGcGGGauGCUU---UGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 73256 0.66 0.984765
Target:  5'- gGGCGCAucagacACGCCUUuuCG-GACGCAa -3'
miRNA:   3'- -UCGCGUuu----UGCGGGAu-GCuUUGCGUg -5'
30584 5' -51.3 NC_006549.1 + 73349 0.66 0.980697
Target:  5'- cGCGCcuuGCGCUCUgagucauccacACGuuACGUACg -3'
miRNA:   3'- uCGCGuuuUGCGGGA-----------UGCuuUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 85886 0.7 0.903421
Target:  5'- gAGCGCGAAcggaGCGUCgUGCuuguaGAACGCGCc -3'
miRNA:   3'- -UCGCGUUU----UGCGGgAUGc----UUUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 86173 0.66 0.98495
Target:  5'- gAGCGUAcGACGCCUcacaccaaucgcccgACGAGGgGCAg -3'
miRNA:   3'- -UCGCGUuUUGCGGGa--------------UGCUUUgCGUg -5'
30584 5' -51.3 NC_006549.1 + 90187 0.66 0.982822
Target:  5'- -aCGaAAAGCGCCCUAagaGGAugGCGa -3'
miRNA:   3'- ucGCgUUUUGCGGGAUg--CUUugCGUg -5'
30584 5' -51.3 NC_006549.1 + 96461 0.66 0.984765
Target:  5'- cGCGCAAuccauaGGCGCCaaAC-AGACGCAg -3'
miRNA:   3'- uCGCGUU------UUGCGGgaUGcUUUGCGUg -5'
30584 5' -51.3 NC_006549.1 + 97757 0.75 0.665944
Target:  5'- uGGUGCAAGACGCggUGCuGGGCGCGCa -3'
miRNA:   3'- -UCGCGUUUUGCGggAUGcUUUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 120096 0.66 0.986367
Target:  5'- cGGCGgucuaaaCGGAuucGCGCCCgaauuUGCGuuACGCGCg -3'
miRNA:   3'- -UCGC-------GUUU---UGCGGG-----AUGCuuUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 125231 0.66 0.988146
Target:  5'- uGCGgAGAcUGCCCcguUACGAuccAUGCACa -3'
miRNA:   3'- uCGCgUUUuGCGGG---AUGCUu--UGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 126934 0.66 0.982822
Target:  5'- uGGCGUGAAauacACGCCCgaaGAcgUGUACg -3'
miRNA:   3'- -UCGCGUUU----UGCGGGaugCUuuGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 127013 0.68 0.963659
Target:  5'- uAGCGUGcgGCGCUacuauCUGCGcuGAAUGCGCa -3'
miRNA:   3'- -UCGCGUuuUGCGG-----GAUGC--UUUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 129966 0.72 0.83447
Target:  5'- uGGUGCcc-AgGCCCUACGAAcgcaggGCGUACa -3'
miRNA:   3'- -UCGCGuuuUgCGGGAUGCUU------UGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 130188 0.72 0.807599
Target:  5'- uGCGCcAGAUGCUCggACGAAACGguCa -3'
miRNA:   3'- uCGCGuUUUGCGGGa-UGCUUUGCguG- -5'
30584 5' -51.3 NC_006549.1 + 130616 0.66 0.986537
Target:  5'- uGGUGuCGGAACGUCUggaAgGAGugGCGCu -3'
miRNA:   3'- -UCGC-GUUUUGCGGGa--UgCUUugCGUG- -5'
30584 5' -51.3 NC_006549.1 + 131670 0.69 0.94306
Target:  5'- aAGCGCGcucacCGCCCaugcgUACGGAACGUg- -3'
miRNA:   3'- -UCGCGUuuu--GCGGG-----AUGCUUUGCGug -5'
30584 5' -51.3 NC_006549.1 + 136354 0.68 0.963659
Target:  5'- uGCGCGAGA-GCCuCUGC---GCGCGCc -3'
miRNA:   3'- uCGCGUUUUgCGG-GAUGcuuUGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.