miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30590 3' -60 NC_006549.1 + 129969 0.66 0.71259
Target:  5'- uAUUGGUgC-CCAGGCCCUaCGaacgcAGGGCg -3'
miRNA:   3'- uUGGCCAgGuGGUCCGGGA-GU-----UCCUG- -5'
30590 3' -60 NC_006549.1 + 7416 0.66 0.702665
Target:  5'- -cCCGGgcCCGCCcGGCCC-CucGGACc -3'
miRNA:   3'- uuGGCCa-GGUGGuCCGGGaGuuCCUG- -5'
30590 3' -60 NC_006549.1 + 6756 0.66 0.682648
Target:  5'- cGCgGGUCCGCaaGGGCCCgacggagaCAAGGGu -3'
miRNA:   3'- uUGgCCAGGUGg-UCCGGGa-------GUUCCUg -5'
30590 3' -60 NC_006549.1 + 44045 0.66 0.672573
Target:  5'- cGACCGGgCUACCAcGCCCaccaAAGGAUc -3'
miRNA:   3'- -UUGGCCaGGUGGUcCGGGag--UUCCUG- -5'
30590 3' -60 NC_006549.1 + 131439 0.66 0.662467
Target:  5'- cGGCCGucuUCCACCAuuccGGCCa-CAGGGGCu -3'
miRNA:   3'- -UUGGCc--AGGUGGU----CCGGgaGUUCCUG- -5'
30590 3' -60 NC_006549.1 + 102136 0.67 0.652336
Target:  5'- cGAUUGGUCCugggggGCCaggAGGUCCUgGGGGGCc -3'
miRNA:   3'- -UUGGCCAGG------UGG---UCCGGGAgUUCCUG- -5'
30590 3' -60 NC_006549.1 + 40941 0.67 0.642189
Target:  5'- cACgGGcCCcCCGGGCCCgauGGGGCc -3'
miRNA:   3'- uUGgCCaGGuGGUCCGGGaguUCCUG- -5'
30590 3' -60 NC_006549.1 + 7121 0.67 0.642189
Target:  5'- -uUUGGuUCCGCCGGGCCCau--GGGCc -3'
miRNA:   3'- uuGGCC-AGGUGGUCCGGGaguuCCUG- -5'
30590 3' -60 NC_006549.1 + 123903 0.67 0.632035
Target:  5'- ----uGUCCACCucuucGGCCUUCGAGGAa -3'
miRNA:   3'- uuggcCAGGUGGu----CCGGGAGUUCCUg -5'
30590 3' -60 NC_006549.1 + 8323 0.67 0.611734
Target:  5'- cACUGGUCCccACCAcGCCgCcCAAGGACc -3'
miRNA:   3'- uUGGCCAGG--UGGUcCGG-GaGUUCCUG- -5'
30590 3' -60 NC_006549.1 + 7530 0.68 0.581412
Target:  5'- -cCCGGU-----GGGCCCUCAGGGGCc -3'
miRNA:   3'- uuGGCCAgguggUCCGGGAGUUCCUG- -5'
30590 3' -60 NC_006549.1 + 41016 0.68 0.541513
Target:  5'- cGCaagaGGUCCGaUAGGCCCcCAGGGAUc -3'
miRNA:   3'- uUGg---CCAGGUgGUCCGGGaGUUCCUG- -5'
30590 3' -60 NC_006549.1 + 7005 0.69 0.525801
Target:  5'- uGCCGGcgcUCCGggaccucaaggagcuCCcGGUCCUCAAGGGCc -3'
miRNA:   3'- uUGGCC---AGGU---------------GGuCCGGGAGUUCCUG- -5'
30590 3' -60 NC_006549.1 + 50494 0.7 0.446616
Target:  5'- cAGCCGGgCCAUCuGGCCCcgCGGGGcCa -3'
miRNA:   3'- -UUGGCCaGGUGGuCCGGGa-GUUCCuG- -5'
30590 3' -60 NC_006549.1 + 7202 0.7 0.441211
Target:  5'- gGGCC-GUCCGgaccccgaggaccucCCGGGCCC-CGAGGACc -3'
miRNA:   3'- -UUGGcCAGGU---------------GGUCCGGGaGUUCCUG- -5'
30590 3' -60 NC_006549.1 + 6613 0.7 0.428745
Target:  5'- uACCGGgucCCACUGGGCCg-CAGGGAg -3'
miRNA:   3'- uUGGCCa--GGUGGUCCGGgaGUUCCUg -5'
30590 3' -60 NC_006549.1 + 41830 0.71 0.419969
Target:  5'- -cCCGGgggCGCCGGGCCCgaGAGGGCc -3'
miRNA:   3'- uuGGCCag-GUGGUCCGGGagUUCCUG- -5'
30590 3' -60 NC_006549.1 + 41603 0.71 0.419969
Target:  5'- cACCGGgaCCACCGGGaauucccgguCCC-CAAGGACu -3'
miRNA:   3'- uUGGCCa-GGUGGUCC----------GGGaGUUCCUG- -5'
30590 3' -60 NC_006549.1 + 7761 0.71 0.419969
Target:  5'- -cUCGGggCCGCCAGGCgUaCAAGGACc -3'
miRNA:   3'- uuGGCCa-GGUGGUCCGgGaGUUCCUG- -5'
30590 3' -60 NC_006549.1 + 123151 0.71 0.377773
Target:  5'- -uCUGGUCCGCCucuguuGCCUUCGAGGAa -3'
miRNA:   3'- uuGGCCAGGUGGuc----CGGGAGUUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.