Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30590 | 5' | -59.7 | NC_006549.1 | + | 41253 | 1.06 | 0.001666 |
Target: 5'- uUGGGCCCAAAGGACCCACGGGCGAAAa -3' miRNA: 3'- -ACCCGGGUUUCCUGGGUGCCCGCUUU- -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 41819 | 0.84 | 0.057133 |
Target: 5'- cGGGCCCgAGAGGGCCCGCGGGUccauccgGAAAa -3' miRNA: 3'- aCCCGGG-UUUCCUGGGUGCCCG-------CUUU- -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 7810 | 0.81 | 0.090067 |
Target: 5'- aGGGuCCCGAGGGACCaaaGGGCGAAAa -3' miRNA: 3'- aCCC-GGGUUUCCUGGgugCCCGCUUU- -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 6665 | 0.81 | 0.10271 |
Target: 5'- aUGGGaCCCAcGGGACCCGCuGGCGAu- -3' miRNA: 3'- -ACCC-GGGUuUCCUGGGUGcCCGCUuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 49805 | 0.79 | 0.12646 |
Target: 5'- gUGGGCCCAGcuGGGCCCACGGGa---- -3' miRNA: 3'- -ACCCGGGUUu-CCUGGGUGCCCgcuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 6958 | 0.79 | 0.12646 |
Target: 5'- aGGGCCCAGAGGGuCCUGCGGGUc--- -3' miRNA: 3'- aCCCGGGUUUCCU-GGGUGCCCGcuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 50973 | 0.78 | 0.14751 |
Target: 5'- gGGGCCCAuGGGGCCCuuCGGGCc--- -3' miRNA: 3'- aCCCGGGUuUCCUGGGu-GCCCGcuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 41396 | 0.77 | 0.18509 |
Target: 5'- uUGGGCCaAAAGGGCCCAgCGGGgaCGAAGg -3' miRNA: 3'- -ACCCGGgUUUCCUGGGU-GCCC--GCUUU- -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 41509 | 0.77 | 0.189752 |
Target: 5'- aGGGCaaGAAGGACCUAaGGGCGAAc -3' miRNA: 3'- aCCCGggUUUCCUGGGUgCCCGCUUu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 7110 | 0.76 | 0.199385 |
Target: 5'- cGGGCCCAu-GGGCCCAguCGGGCu--- -3' miRNA: 3'- aCCCGGGUuuCCUGGGU--GCCCGcuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 41846 | 0.76 | 0.199385 |
Target: 5'- cGGGCCCGcGAGGACCCcCGGGgGc-- -3' miRNA: 3'- aCCCGGGU-UUCCUGGGuGCCCgCuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 7722 | 0.75 | 0.225346 |
Target: 5'- gGGGCCCAgGGGGGCCgAUGGGCc--- -3' miRNA: 3'- aCCCGGGU-UUCCUGGgUGCCCGcuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 41150 | 0.75 | 0.225346 |
Target: 5'- aUGGGuCCCAcGGGACCUAgGGGCccGAGAg -3' miRNA: 3'- -ACCC-GGGUuUCCUGGGUgCCCG--CUUU- -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 40512 | 0.75 | 0.236509 |
Target: 5'- -uGGCCCcguAGGACCCACGGGUcccaGAGGa -3' miRNA: 3'- acCCGGGuu-UCCUGGGUGCCCG----CUUU- -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 49866 | 0.75 | 0.236509 |
Target: 5'- gGGGCCC-GGGGGCCCAgGGGggccCGGAGg -3' miRNA: 3'- aCCCGGGuUUCCUGGGUgCCC----GCUUU- -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 7056 | 0.75 | 0.242263 |
Target: 5'- cGGGCCCGccGGACCCcgcggaccccGCGGGCc--- -3' miRNA: 3'- aCCCGGGUuuCCUGGG----------UGCCCGcuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 7158 | 0.75 | 0.254119 |
Target: 5'- cGGGCCC-AAGGGCCCucCGGgaGCGGAu -3' miRNA: 3'- aCCCGGGuUUCCUGGGu-GCC--CGCUUu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 41729 | 0.74 | 0.266447 |
Target: 5'- cUGGaCCCAGGGGcGCCCGCGGGCc--- -3' miRNA: 3'- -ACCcGGGUUUCC-UGGGUGCCCGcuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 7845 | 0.74 | 0.272791 |
Target: 5'- cGGuCCCGuagguucgaGGGGACCCGCGGGCGu-- -3' miRNA: 3'- aCCcGGGU---------UUCCUGGGUGCCCGCuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 40647 | 0.74 | 0.279255 |
Target: 5'- aGGGCCCAGAGGAgaaACGGGgGAc- -3' miRNA: 3'- aCCCGGGUUUCCUgggUGCCCgCUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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