miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30590 5' -59.7 NC_006549.1 + 6665 0.81 0.10271
Target:  5'- aUGGGaCCCAcGGGACCCGCuGGCGAu- -3'
miRNA:   3'- -ACCC-GGGUuUCCUGGGUGcCCGCUuu -5'
30590 5' -59.7 NC_006549.1 + 6727 0.7 0.489281
Target:  5'- aGGGUCCAGAcggcacugcuGGugCUACGGGCu--- -3'
miRNA:   3'- aCCCGGGUUU----------CCugGGUGCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 6773 0.7 0.489281
Target:  5'- --aGCCCGguuaAGGGACCCGCGGGUc--- -3'
miRNA:   3'- accCGGGU----UUCCUGGGUGCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 6922 0.69 0.547589
Target:  5'- aGGGCCCgAGAGGAgCUCGCGGaGagcaGGGAa -3'
miRNA:   3'- aCCCGGG-UUUCCU-GGGUGCC-Cg---CUUU- -5'
30590 5' -59.7 NC_006549.1 + 6958 0.79 0.12646
Target:  5'- aGGGCCCAGAGGGuCCUGCGGGUc--- -3'
miRNA:   3'- aCCCGGGUUUCCU-GGGUGCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 7056 0.75 0.242263
Target:  5'- cGGGCCCGccGGACCCcgcggaccccGCGGGCc--- -3'
miRNA:   3'- aCCCGGGUuuCCUGGG----------UGCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 7110 0.76 0.199385
Target:  5'- cGGGCCCAu-GGGCCCAguCGGGCu--- -3'
miRNA:   3'- aCCCGGGUuuCCUGGGU--GCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 7158 0.75 0.254119
Target:  5'- cGGGCCC-AAGGGCCCucCGGgaGCGGAu -3'
miRNA:   3'- aCCCGGGuUUCCUGGGu-GCC--CGCUUu -5'
30590 5' -59.7 NC_006549.1 + 7387 0.69 0.518109
Target:  5'- aGGGCCCc-AGGGCCCGCccggcccuccaGGGCc--- -3'
miRNA:   3'- aCCCGGGuuUCCUGGGUG-----------CCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 7516 0.67 0.65872
Target:  5'- aGGGgCCAgagggagaccAAGGACCCAUagGGGCcAAGg -3'
miRNA:   3'- aCCCgGGU----------UUCCUGGGUG--CCCGcUUU- -5'
30590 5' -59.7 NC_006549.1 + 7722 0.75 0.225346
Target:  5'- gGGGCCCAgGGGGGCCgAUGGGCc--- -3'
miRNA:   3'- aCCCGGGU-UUCCUGGgUGCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 7810 0.81 0.090067
Target:  5'- aGGGuCCCGAGGGACCaaaGGGCGAAAa -3'
miRNA:   3'- aCCC-GGGUUUCCUGGgugCCCGCUUU- -5'
30590 5' -59.7 NC_006549.1 + 7845 0.74 0.272791
Target:  5'- cGGuCCCGuagguucgaGGGGACCCGCGGGCGu-- -3'
miRNA:   3'- aCCcGGGU---------UUCCUGGGUGCCCGCuuu -5'
30590 5' -59.7 NC_006549.1 + 40512 0.75 0.236509
Target:  5'- -uGGCCCcguAGGACCCACGGGUcccaGAGGa -3'
miRNA:   3'- acCCGGGuu-UCCUGGGUGCCCG----CUUU- -5'
30590 5' -59.7 NC_006549.1 + 40647 0.74 0.279255
Target:  5'- aGGGCCCAGAGGAgaaACGGGgGAc- -3'
miRNA:   3'- aCCCGGGUUUCCUgggUGCCCgCUuu -5'
30590 5' -59.7 NC_006549.1 + 40939 0.73 0.327926
Target:  5'- cGGGCCCcccGGGCCCGaugGGGcCGAGAg -3'
miRNA:   3'- aCCCGGGuuuCCUGGGUg--CCC-GCUUU- -5'
30590 5' -59.7 NC_006549.1 + 41104 0.73 0.313406
Target:  5'- cGGGgagacacauucaCCUAcAAGGuCCCGCGGGCGAAAg -3'
miRNA:   3'- aCCC------------GGGU-UUCCuGGGUGCCCGCUUU- -5'
30590 5' -59.7 NC_006549.1 + 41150 0.75 0.225346
Target:  5'- aUGGGuCCCAcGGGACCUAgGGGCccGAGAg -3'
miRNA:   3'- -ACCC-GGGUuUCCUGGGUgCCCG--CUUU- -5'
30590 5' -59.7 NC_006549.1 + 41253 1.06 0.001666
Target:  5'- uUGGGCCCAAAGGACCCACGGGCGAAAa -3'
miRNA:   3'- -ACCCGGGUUUCCUGGGUGCCCGCUUU- -5'
30590 5' -59.7 NC_006549.1 + 41396 0.77 0.18509
Target:  5'- uUGGGCCaAAAGGGCCCAgCGGGgaCGAAGg -3'
miRNA:   3'- -ACCCGGgUUUCCUGGGU-GCCC--GCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.