miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30590 5' -59.7 NC_006549.1 + 41509 0.77 0.189752
Target:  5'- aGGGCaaGAAGGACCUAaGGGCGAAc -3'
miRNA:   3'- aCCCGggUUUCCUGGGUgCCCGCUUu -5'
30590 5' -59.7 NC_006549.1 + 41692 0.73 0.313406
Target:  5'- -cGGCCCcccuGGGCCCGCGGGCc--- -3'
miRNA:   3'- acCCGGGuuu-CCUGGGUGCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 41729 0.74 0.266447
Target:  5'- cUGGaCCCAGGGGcGCCCGCGGGCc--- -3'
miRNA:   3'- -ACCcGGGUUUCC-UGGGUGCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 41819 0.84 0.057133
Target:  5'- cGGGCCCgAGAGGGCCCGCGGGUccauccgGAAAa -3'
miRNA:   3'- aCCCGGG-UUUCCUGGGUGCCCG-------CUUU- -5'
30590 5' -59.7 NC_006549.1 + 41846 0.76 0.199385
Target:  5'- cGGGCCCGcGAGGACCCcCGGGgGc-- -3'
miRNA:   3'- aCCCGGGU-UUCCUGGGuGCCCgCuuu -5'
30590 5' -59.7 NC_006549.1 + 45920 0.68 0.597772
Target:  5'- uUGGGCaaaAAAGGACCCACaGGauggcaGGGAa -3'
miRNA:   3'- -ACCCGgg-UUUCCUGGGUGcCCg-----CUUU- -5'
30590 5' -59.7 NC_006549.1 + 46278 0.72 0.374424
Target:  5'- gGGGaCCAAAGcGCCCGCGGauGCGAAAu -3'
miRNA:   3'- aCCCgGGUUUCcUGGGUGCC--CGCUUU- -5'
30590 5' -59.7 NC_006549.1 + 46963 0.7 0.452062
Target:  5'- aGGcGCCCAAAGaGGCaacCGGGCGAAu -3'
miRNA:   3'- aCC-CGGGUUUC-CUGgguGCCCGCUUu -5'
30590 5' -59.7 NC_006549.1 + 49679 0.67 0.638403
Target:  5'- cUGGGaCCUugcGGACCCACGGuGCc--- -3'
miRNA:   3'- -ACCC-GGGuuuCCUGGGUGCC-CGcuuu -5'
30590 5' -59.7 NC_006549.1 + 49722 0.72 0.350628
Target:  5'- cGGGCCCGuGGGGCCCGuuGGCc--- -3'
miRNA:   3'- aCCCGGGUuUCCUGGGUgcCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 49805 0.79 0.12646
Target:  5'- gUGGGCCCAGcuGGGCCCACGGGa---- -3'
miRNA:   3'- -ACCCGGGUUu-CCUGGGUGCCCgcuuu -5'
30590 5' -59.7 NC_006549.1 + 49866 0.75 0.236509
Target:  5'- gGGGCCC-GGGGGCCCAgGGGggccCGGAGg -3'
miRNA:   3'- aCCCGGGuUUCCUGGGUgCCC----GCUUU- -5'
30590 5' -59.7 NC_006549.1 + 50373 0.67 0.618067
Target:  5'- -uGGCCCgGGAGGACCCucUGGGCc--- -3'
miRNA:   3'- acCCGGG-UUUCCUGGGu-GCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 50473 0.67 0.628234
Target:  5'- cGGGgCCAAcgaggccaauGGGACCCACuGGCc--- -3'
miRNA:   3'- aCCCgGGUU----------UCCUGGGUGcCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 50510 0.69 0.52787
Target:  5'- gUGGGUCCAGGuGGACCagcCGGGCc--- -3'
miRNA:   3'- -ACCCGGGUUU-CCUGGgu-GCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 50801 0.7 0.479838
Target:  5'- uUGGGUCCuggcGGGCCCGCuGGGCc--- -3'
miRNA:   3'- -ACCCGGGuuu-CCUGGGUG-CCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 50865 0.68 0.607911
Target:  5'- aGGuuGCCCAAcGGACCCAggUGGGCc--- -3'
miRNA:   3'- aCC--CGGGUUuCCUGGGU--GCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 50973 0.78 0.14751
Target:  5'- gGGGCCCAuGGGGCCCuuCGGGCc--- -3'
miRNA:   3'- aCCCGGGUuUCCUGGGu-GCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 51009 0.7 0.489281
Target:  5'- aGGGCCCc-GGGGCCCcuuaGGGcCGAu- -3'
miRNA:   3'- aCCCGGGuuUCCUGGGug--CCC-GCUuu -5'
30590 5' -59.7 NC_006549.1 + 59010 0.67 0.65872
Target:  5'- gGGGCgaAGAGGGCUCcUGGGUGAu- -3'
miRNA:   3'- aCCCGggUUUCCUGGGuGCCCGCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.