miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30590 5' -59.7 NC_006549.1 + 102595 0.67 0.638403
Target:  5'- gGGuGCCCgGGAGGACCUcuCGGGCc--- -3'
miRNA:   3'- aCC-CGGG-UUUCCUGGGu-GCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 102568 0.71 0.416445
Target:  5'- cUGGGUCCAGcgcagcccuuuGGGCCCGCGgggccGGCGGAAc -3'
miRNA:   3'- -ACCCGGGUUu----------CCUGGGUGC-----CCGCUUU- -5'
30590 5' -59.7 NC_006549.1 + 102472 0.67 0.648568
Target:  5'- -uGGCCU--GGGACuCCugGGGCGc-- -3'
miRNA:   3'- acCCGGGuuUCCUG-GGugCCCGCuuu -5'
30590 5' -59.7 NC_006549.1 + 102389 0.67 0.618067
Target:  5'- -uGGCCCuuguGGACCCAUGGGg---- -3'
miRNA:   3'- acCCGGGuuu-CCUGGGUGCCCgcuuu -5'
30590 5' -59.7 NC_006549.1 + 101914 0.68 0.567535
Target:  5'- gGGGCCCugcAGG-CCCugGGacaccGCGAGc -3'
miRNA:   3'- aCCCGGGuu-UCCuGGGugCC-----CGCUUu -5'
30590 5' -59.7 NC_006549.1 + 99587 0.69 0.52787
Target:  5'- -uGGCUC-GGGGACCU-CGGGCGAGGg -3'
miRNA:   3'- acCCGGGuUUCCUGGGuGCCCGCUUU- -5'
30590 5' -59.7 NC_006549.1 + 76101 0.66 0.71889
Target:  5'- cGGuGUUUAGAGGAUCCagcACGGGCGc-- -3'
miRNA:   3'- aCC-CGGGUUUCCUGGG---UGCCCGCuuu -5'
30590 5' -59.7 NC_006549.1 + 68815 0.7 0.470484
Target:  5'- gGuGGCCUAcaggcAGGGACCUACGGGUa--- -3'
miRNA:   3'- aC-CCGGGU-----UUCCUGGGUGCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 59010 0.67 0.65872
Target:  5'- gGGGCgaAGAGGGCUCcUGGGUGAu- -3'
miRNA:   3'- aCCCGggUUUCCUGGGuGCCCGCUuu -5'
30590 5' -59.7 NC_006549.1 + 51009 0.7 0.489281
Target:  5'- aGGGCCCc-GGGGCCCcuuaGGGcCGAu- -3'
miRNA:   3'- aCCCGGGuuUCCUGGGug--CCC-GCUuu -5'
30590 5' -59.7 NC_006549.1 + 50973 0.78 0.14751
Target:  5'- gGGGCCCAuGGGGCCCuuCGGGCc--- -3'
miRNA:   3'- aCCCGGGUuUCCUGGGu-GCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 50865 0.68 0.607911
Target:  5'- aGGuuGCCCAAcGGACCCAggUGGGCc--- -3'
miRNA:   3'- aCC--CGGGUUuCCUGGGU--GCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 50801 0.7 0.479838
Target:  5'- uUGGGUCCuggcGGGCCCGCuGGGCc--- -3'
miRNA:   3'- -ACCCGGGuuu-CCUGGGUG-CCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 50510 0.69 0.52787
Target:  5'- gUGGGUCCAGGuGGACCagcCGGGCc--- -3'
miRNA:   3'- -ACCCGGGUUU-CCUGGgu-GCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 50473 0.67 0.628234
Target:  5'- cGGGgCCAAcgaggccaauGGGACCCACuGGCc--- -3'
miRNA:   3'- aCCCgGGUU----------UCCUGGGUGcCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 50373 0.67 0.618067
Target:  5'- -uGGCCCgGGAGGACCCucUGGGCc--- -3'
miRNA:   3'- acCCGGG-UUUCCUGGGu-GCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 49866 0.75 0.236509
Target:  5'- gGGGCCC-GGGGGCCCAgGGGggccCGGAGg -3'
miRNA:   3'- aCCCGGGuUUCCUGGGUgCCC----GCUUU- -5'
30590 5' -59.7 NC_006549.1 + 49805 0.79 0.12646
Target:  5'- gUGGGCCCAGcuGGGCCCACGGGa---- -3'
miRNA:   3'- -ACCCGGGUUu-CCUGGGUGCCCgcuuu -5'
30590 5' -59.7 NC_006549.1 + 49722 0.72 0.350628
Target:  5'- cGGGCCCGuGGGGCCCGuuGGCc--- -3'
miRNA:   3'- aCCCGGGUuUCCUGGGUgcCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 49679 0.67 0.638403
Target:  5'- cUGGGaCCUugcGGACCCACGGuGCc--- -3'
miRNA:   3'- -ACCC-GGGuuuCCUGGGUGCC-CGcuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.