miRNA display CGI

Results 41 - 48 of 48 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
30590	5'	-59.7	NC_006549.1	+	41396	0.77	0.18509
	Target:  5'- uUGGGCCaAAAGGGCCCAgCGGGgaCGAAGg -3' miRNA:   3'- -ACCCGGgUUUCCUGGGU-GCCC--GCUUU- -5'
30590	5'	-59.7	NC_006549.1	+	50973	0.78	0.14751
	Target:  5'- gGGGCCCAuGGGGCCCuuCGGGCc--- -3' miRNA:   3'- aCCCGGGUuUCCUGGGu-GCCCGcuuu -5'
30590	5'	-59.7	NC_006549.1	+	6958	0.79	0.12646
	Target:  5'- aGGGCCCAGAGGGuCCUGCGGGUc--- -3' miRNA:   3'- aCCCGGGUUUCCU-GGGUGCCCGcuuu -5'
30590	5'	-59.7	NC_006549.1	+	49805	0.79	0.12646
	Target:  5'- gUGGGCCCAGcuGGGCCCACGGGa---- -3' miRNA:   3'- -ACCCGGGUUu-CCUGGGUGCCCgcuuu -5'
30590	5'	-59.7	NC_006549.1	+	6665	0.81	0.10271
	Target:  5'- aUGGGaCCCAcGGGACCCGCuGGCGAu- -3' miRNA:   3'- -ACCC-GGGUuUCCUGGGUGcCCGCUuu -5'
30590	5'	-59.7	NC_006549.1	+	7810	0.81	0.090067
	Target:  5'- aGGGuCCCGAGGGACCaaaGGGCGAAAa -3' miRNA:   3'- aCCC-GGGUUUCCUGGgugCCCGCUUU- -5'
30590	5'	-59.7	NC_006549.1	+	41819	0.84	0.057133
	Target:  5'- cGGGCCCgAGAGGGCCCGCGGGUccauccgGAAAa -3' miRNA:   3'- aCCCGGG-UUUCCUGGGUGCCCG-------CUUU- -5'
30590	5'	-59.7	NC_006549.1	+	41253	1.06	0.001666
	Target:  5'- uUGGGCCCAAAGGACCCACGGGCGAAAa -3' miRNA:   3'- -ACCCGGGUUUCCUGGGUGCCCGCUUU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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