Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30590 | 5' | -59.7 | NC_006549.1 | + | 68815 | 0.7 | 0.470484 |
Target: 5'- gGuGGCCUAcaggcAGGGACCUACGGGUa--- -3' miRNA: 3'- aC-CCGGGU-----UUCCUGGGUGCCCGcuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 46963 | 0.7 | 0.452062 |
Target: 5'- aGGcGCCCAAAGaGGCaacCGGGCGAAu -3' miRNA: 3'- aCC-CGGGUUUC-CUGgguGCCCGCUUu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 102568 | 0.71 | 0.416445 |
Target: 5'- cUGGGUCCAGcgcagcccuuuGGGCCCGCGgggccGGCGGAAc -3' miRNA: 3'- -ACCCGGGUUu----------CCUGGGUGC-----CCGCUUU- -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 46278 | 0.72 | 0.374424 |
Target: 5'- gGGGaCCAAAGcGCCCGCGGauGCGAAAu -3' miRNA: 3'- aCCCgGGUUUCcUGGGUGCC--CGCUUU- -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 49722 | 0.72 | 0.350628 |
Target: 5'- cGGGCCCGuGGGGCCCGuuGGCc--- -3' miRNA: 3'- aCCCGGGUuUCCUGGGUgcCCGcuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 40939 | 0.73 | 0.327926 |
Target: 5'- cGGGCCCcccGGGCCCGaugGGGcCGAGAg -3' miRNA: 3'- aCCCGGGuuuCCUGGGUg--CCC-GCUUU- -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 41104 | 0.73 | 0.313406 |
Target: 5'- cGGGgagacacauucaCCUAcAAGGuCCCGCGGGCGAAAg -3' miRNA: 3'- aCCC------------GGGU-UUCCuGGGUGCCCGCUUU- -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 41692 | 0.73 | 0.313406 |
Target: 5'- -cGGCCCcccuGGGCCCGCGGGCc--- -3' miRNA: 3'- acCCGGGuuu-CCUGGGUGCCCGcuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 40647 | 0.74 | 0.279255 |
Target: 5'- aGGGCCCAGAGGAgaaACGGGgGAc- -3' miRNA: 3'- aCCCGGGUUUCCUgggUGCCCgCUuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 7845 | 0.74 | 0.272791 |
Target: 5'- cGGuCCCGuagguucgaGGGGACCCGCGGGCGu-- -3' miRNA: 3'- aCCcGGGU---------UUCCUGGGUGCCCGCuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 41729 | 0.74 | 0.266447 |
Target: 5'- cUGGaCCCAGGGGcGCCCGCGGGCc--- -3' miRNA: 3'- -ACCcGGGUUUCC-UGGGUGCCCGcuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 7158 | 0.75 | 0.254119 |
Target: 5'- cGGGCCC-AAGGGCCCucCGGgaGCGGAu -3' miRNA: 3'- aCCCGGGuUUCCUGGGu-GCC--CGCUUu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 7056 | 0.75 | 0.242263 |
Target: 5'- cGGGCCCGccGGACCCcgcggaccccGCGGGCc--- -3' miRNA: 3'- aCCCGGGUuuCCUGGG----------UGCCCGcuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 40512 | 0.75 | 0.236509 |
Target: 5'- -uGGCCCcguAGGACCCACGGGUcccaGAGGa -3' miRNA: 3'- acCCGGGuu-UCCUGGGUGCCCG----CUUU- -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 49866 | 0.75 | 0.236509 |
Target: 5'- gGGGCCC-GGGGGCCCAgGGGggccCGGAGg -3' miRNA: 3'- aCCCGGGuUUCCUGGGUgCCC----GCUUU- -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 7722 | 0.75 | 0.225346 |
Target: 5'- gGGGCCCAgGGGGGCCgAUGGGCc--- -3' miRNA: 3'- aCCCGGGU-UUCCUGGgUGCCCGcuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 41150 | 0.75 | 0.225346 |
Target: 5'- aUGGGuCCCAcGGGACCUAgGGGCccGAGAg -3' miRNA: 3'- -ACCC-GGGUuUCCUGGGUgCCCG--CUUU- -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 41846 | 0.76 | 0.199385 |
Target: 5'- cGGGCCCGcGAGGACCCcCGGGgGc-- -3' miRNA: 3'- aCCCGGGU-UUCCUGGGuGCCCgCuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 7110 | 0.76 | 0.199385 |
Target: 5'- cGGGCCCAu-GGGCCCAguCGGGCu--- -3' miRNA: 3'- aCCCGGGUuuCCUGGGU--GCCCGcuuu -5' |
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30590 | 5' | -59.7 | NC_006549.1 | + | 41509 | 0.77 | 0.189752 |
Target: 5'- aGGGCaaGAAGGACCUAaGGGCGAAc -3' miRNA: 3'- aCCCGggUUUCCUGGGUgCCCGCUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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