miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30594 5' -58.5 NC_006549.1 + 102556 0.8 0.155209
Target:  5'- cAGCCCUuuGGGCCCGcgGGGCCGGCg -3'
miRNA:   3'- -UUGGGAucCCUGGGCaaCCCGGUUGg -5'
30594 5' -58.5 NC_006549.1 + 102465 0.67 0.715928
Target:  5'- gGACuCCUGGGGcGCCaGcUGGGCCGggggguccaggaggGCCg -3'
miRNA:   3'- -UUG-GGAUCCC-UGGgCaACCCGGU--------------UGG- -5'
30594 5' -58.5 NC_006549.1 + 102130 0.69 0.607911
Target:  5'- -gUCCUGGGGGgccaggagguCCUGggGGGCCAggauuuauACCa -3'
miRNA:   3'- uuGGGAUCCCU----------GGGCaaCCCGGU--------UGG- -5'
30594 5' -58.5 NC_006549.1 + 101929 0.72 0.416445
Target:  5'- cGCCCUGGaGACCCGg-GGGCCcugcaGGCCc -3'
miRNA:   3'- uUGGGAUCcCUGGGCaaCCCGG-----UUGG- -5'
30594 5' -58.5 NC_006549.1 + 101855 0.7 0.547589
Target:  5'- gGACCCUGaGG-CCCGggaGGGCCuauagGACCg -3'
miRNA:   3'- -UUGGGAUcCCuGGGCaa-CCCGG-----UUGG- -5'
30594 5' -58.5 NC_006549.1 + 82544 0.71 0.489281
Target:  5'- gGACCCauGGGGCCCGUuggcUauucuacgcagaGGGCCAGCg -3'
miRNA:   3'- -UUGGGauCCCUGGGCA----A------------CCCGGUUGg -5'
30594 5' -58.5 NC_006549.1 + 51008 0.69 0.577578
Target:  5'- gGGCCCc-GGGGCCCcUUaGGGCCGAUn -3'
miRNA:   3'- -UUGGGauCCCUGGGcAA-CCCGGUUGg -5'
30594 5' -58.5 NC_006549.1 + 50982 0.76 0.260223
Target:  5'- cGGCCCUaAGGGGCCCaugGGGCCcuucgGGCCu -3'
miRNA:   3'- -UUGGGA-UCCCUGGGcaaCCCGG-----UUGG- -5'
30594 5' -58.5 NC_006549.1 + 50853 0.69 0.607911
Target:  5'- gGACCCaGGuGGGCCC-UUGGGUccuggCAGCCc -3'
miRNA:   3'- -UUGGGaUC-CCUGGGcAACCCG-----GUUGG- -5'
30594 5' -58.5 NC_006549.1 + 50797 0.74 0.320604
Target:  5'- -gUCCUGGcGGGCCCGcUGGGCCuguugcGCCc -3'
miRNA:   3'- uuGGGAUC-CCUGGGCaACCCGGu-----UGG- -5'
30594 5' -58.5 NC_006549.1 + 50633 0.71 0.470484
Target:  5'- -cCCCUAGuGGuuCCCGcUGGGCCcuGCCc -3'
miRNA:   3'- uuGGGAUC-CCu-GGGCaACCCGGu-UGG- -5'
30594 5' -58.5 NC_006549.1 + 50579 0.97 0.00947
Target:  5'- gAACCCUGaGGACCCGUUGGGCCAACCu -3'
miRNA:   3'- -UUGGGAUcCCUGGGCAACCCGGUUGG- -5'
30594 5' -58.5 NC_006549.1 + 50533 0.66 0.767094
Target:  5'- -gUCCgacGGGGCCCGUuuguccggUGGGuccagguggaCCAGCCg -3'
miRNA:   3'- uuGGGau-CCCUGGGCA--------ACCC----------GGUUGG- -5'
30594 5' -58.5 NC_006549.1 + 50373 0.74 0.342938
Target:  5'- uGGCCCgGGaGGACCCucUGGGCCGuCCg -3'
miRNA:   3'- -UUGGGaUC-CCUGGGcaACCCGGUuGG- -5'
30594 5' -58.5 NC_006549.1 + 49874 0.77 0.219934
Target:  5'- gGACCCUuGGGGCCCGg-GGGCCcaggggGGCCc -3'
miRNA:   3'- -UUGGGAuCCCUGGGCaaCCCGG------UUGG- -5'
30594 5' -58.5 NC_006549.1 + 49820 0.71 0.470484
Target:  5'- aGACCCUuuGGuCCCG-UGGGcCCAGCUg -3'
miRNA:   3'- -UUGGGAucCCuGGGCaACCC-GGUUGG- -5'
30594 5' -58.5 NC_006549.1 + 49739 0.72 0.434042
Target:  5'- uGACCCUGcgucccccGcGGGCCCGUgGGGCCcguuGGCCc -3'
miRNA:   3'- -UUGGGAU--------C-CCUGGGCAaCCCGG----UUGG- -5'
30594 5' -58.5 NC_006549.1 + 41818 0.68 0.66885
Target:  5'- gGGCCCgAGaGGGCCCGc-GGGuCCAuCCg -3'
miRNA:   3'- -UUGGGaUC-CCUGGGCaaCCC-GGUuGG- -5'
30594 5' -58.5 NC_006549.1 + 41727 0.71 0.479838
Target:  5'- gGACCCaGGGGcGCCCGc-GGGCCccCCg -3'
miRNA:   3'- -UUGGGaUCCC-UGGGCaaCCCGGuuGG- -5'
30594 5' -58.5 NC_006549.1 + 41412 0.84 0.078912
Target:  5'- gGACCCgcGGGcCCCGUUGGGCCAaaaggGCCc -3'
miRNA:   3'- -UUGGGauCCCuGGGCAACCCGGU-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.