miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30600 5' -52.2 NC_006549.1 + 74951 0.69 0.928839
Target:  5'- gACGGGCGcGGAGguuccuuuggGCUCAAAUuaUACCCc -3'
miRNA:   3'- -UGCCCGCuUCUUa---------UGGGUUUG--GUGGG- -5'
30600 5' -52.2 NC_006549.1 + 77127 0.67 0.967209
Target:  5'- aACGGcucCGGAGA--ACCCAAAagACCCg -3'
miRNA:   3'- -UGCCc--GCUUCUuaUGGGUUUggUGGG- -5'
30600 5' -52.2 NC_006549.1 + 82026 0.67 0.960356
Target:  5'- aGCGGGgGAuGggUAuaacCCCAugucccuccguuAugCGCCCa -3'
miRNA:   3'- -UGCCCgCUuCuuAU----GGGU------------UugGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 87916 0.67 0.963896
Target:  5'- aAUGGGUGAucgagcGAAUGCUCAGGCaCAaaaCCa -3'
miRNA:   3'- -UGCCCGCUu-----CUUAUGGGUUUG-GUg--GG- -5'
30600 5' -52.2 NC_006549.1 + 90207 0.66 0.984611
Target:  5'- gGCGGGCuuauGGAGA--ACCaacgaAAAgCGCCCu -3'
miRNA:   3'- -UGCCCG----CUUCUuaUGGg----UUUgGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 96920 0.67 0.960356
Target:  5'- gACGGGCGucacGGGAUACgCCGAACgCAa-- -3'
miRNA:   3'- -UGCCCGCu---UCUUAUG-GGUUUG-GUggg -5'
30600 5' -52.2 NC_006549.1 + 97093 0.67 0.963896
Target:  5'- aACGGaCGGAGGAcaaUGCCUc-ACUACCCu -3'
miRNA:   3'- -UGCCcGCUUCUU---AUGGGuuUGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 98078 0.68 0.956193
Target:  5'- aGCGcGGUGAcGAGUucgaaugGCCCAAAUUagaGCCCg -3'
miRNA:   3'- -UGC-CCGCUuCUUA-------UGGGUUUGG---UGGG- -5'
30600 5' -52.2 NC_006549.1 + 98998 0.66 0.978318
Target:  5'- gUGGcGCGuuGAGcgcggcACCCAAGgCGCCCg -3'
miRNA:   3'- uGCC-CGCuuCUUa-----UGGGUUUgGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 118629 0.72 0.784731
Target:  5'- -aGGG-GGAGAuUACCgGuACCACCCa -3'
miRNA:   3'- ugCCCgCUUCUuAUGGgUuUGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 119620 0.68 0.954206
Target:  5'- -gGGGCGGAGGggcgugcuguAUGCCUGGuauucucauucuauCCACCCc -3'
miRNA:   3'- ugCCCGCUUCU----------UAUGGGUUu-------------GGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 130126 0.68 0.948322
Target:  5'- aACGucauGGCG-GGAAUGCCgGAGCC-CCUg -3'
miRNA:   3'- -UGC----CCGCuUCUUAUGGgUUUGGuGGG- -5'
30600 5' -52.2 NC_006549.1 + 131684 0.75 0.621838
Target:  5'- gGCGGGCGGAGugaaagcGCgCucACCGCCCa -3'
miRNA:   3'- -UGCCCGCUUCuua----UGgGuuUGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 137645 0.67 0.967209
Target:  5'- -aGGaGaCGAAGggUAUCCGGccacggcgaaacACUACCCu -3'
miRNA:   3'- ugCC-C-GCUUCuuAUGGGUU------------UGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.