miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30600 5' -52.2 NC_006549.1 + 6628 0.67 0.96909
Target:  5'- cCGGGcCGAcuGGAAUACcgggucccacugggCCGcagggagacgcagGACCACCCg -3'
miRNA:   3'- uGCCC-GCU--UCUUAUG--------------GGU-------------UUGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 7177 0.7 0.892099
Target:  5'- cCGGGCcccGAGGAccuCCCGGGCCcaaggGCCCu -3'
miRNA:   3'- uGCCCG---CUUCUuauGGGUUUGG-----UGGG- -5'
30600 5' -52.2 NC_006549.1 + 7821 0.67 0.967209
Target:  5'- cGCGGGCGuucAGggU-CCCGAGggACCa -3'
miRNA:   3'- -UGCCCGCu--UCuuAuGGGUUUggUGGg -5'
30600 5' -52.2 NC_006549.1 + 8836 0.67 0.967209
Target:  5'- gACGcGGCGcaaacGGAAgacGCCgaaaaCGGACCGCCCa -3'
miRNA:   3'- -UGC-CCGCu----UCUUa--UGG-----GUUUGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 11122 0.66 0.978318
Target:  5'- cCGuGGCGGA----ACCCAAAcCCACCa -3'
miRNA:   3'- uGC-CCGCUUcuuaUGGGUUU-GGUGGg -5'
30600 5' -52.2 NC_006549.1 + 23650 0.69 0.91402
Target:  5'- uGCGGgguucgcuacguaucGCGuGAGAuccaaacUGCCCAAACUGCCCa -3'
miRNA:   3'- -UGCC---------------CGC-UUCUu------AUGGGUUUGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 36321 0.67 0.963896
Target:  5'- cGCGaaaaauGCGAAGAGUuucucgaaaACCCGGGCaucaACCCa -3'
miRNA:   3'- -UGCc-----CGCUUCUUA---------UGGGUUUGg---UGGG- -5'
30600 5' -52.2 NC_006549.1 + 38939 0.68 0.956583
Target:  5'- uCGGGUGcGGAAcACCCAuugcuuguaacGAUgGCCCu -3'
miRNA:   3'- uGCCCGCuUCUUaUGGGU-----------UUGgUGGG- -5'
30600 5' -52.2 NC_006549.1 + 41076 0.77 0.528567
Target:  5'- cGCGGGCGaAAGuggGCCCGcuggccccacagGACCAUCCg -3'
miRNA:   3'- -UGCCCGC-UUCuuaUGGGU------------UUGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 41820 0.68 0.952573
Target:  5'- cCGGGCccGAGAggGCCCGcggguCCAUCCg -3'
miRNA:   3'- uGCCCGc-UUCUuaUGGGUuu---GGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 50165 0.69 0.923341
Target:  5'- cGCGGGCcgucuuUACCCAuAgCGCCCu -3'
miRNA:   3'- -UGCCCGcuucuuAUGGGUuUgGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 53449 0.69 0.91159
Target:  5'- aGCGGGCGGccgaAGAGauUGCggAAGCCGCCa -3'
miRNA:   3'- -UGCCCGCU----UCUU--AUGggUUUGGUGGg -5'
30600 5' -52.2 NC_006549.1 + 59686 1.11 0.004645
Target:  5'- cACGGGCGAAGAAUACCCAAACCACCCc -3'
miRNA:   3'- -UGCCCGCUUCUUAUGGGUUUGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 59830 0.67 0.967209
Target:  5'- aAC-GGCGucccAGUGCCCGGccacGCCGCCCc -3'
miRNA:   3'- -UGcCCGCuuc-UUAUGGGUU----UGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 63625 0.68 0.934085
Target:  5'- cAC-GGCGguGGAUGCCgAuuuacuGGCCGCCCu -3'
miRNA:   3'- -UGcCCGCuuCUUAUGGgU------UUGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 64157 0.73 0.765566
Target:  5'- aGCGGGCGAu-----CCCu--CCGCCCa -3'
miRNA:   3'- -UGCCCGCUucuuauGGGuuuGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 69447 0.68 0.943825
Target:  5'- aACGGuGgGAaaAGAuUACCuCGAuCCGCCCg -3'
miRNA:   3'- -UGCC-CgCU--UCUuAUGG-GUUuGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 69846 0.66 0.978318
Target:  5'- aGCGGGCG--GAAUGCCaggguacgaaaAGACCGCg- -3'
miRNA:   3'- -UGCCCGCuuCUUAUGGg----------UUUGGUGgg -5'
30600 5' -52.2 NC_006549.1 + 70911 0.66 0.978318
Target:  5'- -gGGGCGA---GUGCCCucuCgACCCc -3'
miRNA:   3'- ugCCCGCUucuUAUGGGuuuGgUGGG- -5'
30600 5' -52.2 NC_006549.1 + 74176 0.66 0.984611
Target:  5'- gUGGGCGGA----AUCCAAACaCGCCa -3'
miRNA:   3'- uGCCCGCUUcuuaUGGGUUUG-GUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.