Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30600 | 5' | -52.2 | NC_006549.1 | + | 59686 | 1.11 | 0.004645 |
Target: 5'- cACGGGCGAAGAAUACCCAAACCACCCc -3' miRNA: 3'- -UGCCCGCUUCUUAUGGGUUUGGUGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 41076 | 0.77 | 0.528567 |
Target: 5'- cGCGGGCGaAAGuggGCCCGcuggccccacagGACCAUCCg -3' miRNA: 3'- -UGCCCGC-UUCuuaUGGGU------------UUGGUGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 131684 | 0.75 | 0.621838 |
Target: 5'- gGCGGGCGGAGugaaagcGCgCucACCGCCCa -3' miRNA: 3'- -UGCCCGCUUCuua----UGgGuuUGGUGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 64157 | 0.73 | 0.765566 |
Target: 5'- aGCGGGCGAu-----CCCu--CCGCCCa -3' miRNA: 3'- -UGCCCGCUucuuauGGGuuuGGUGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 118629 | 0.72 | 0.784731 |
Target: 5'- -aGGG-GGAGAuUACCgGuACCACCCa -3' miRNA: 3'- ugCCCgCUUCUuAUGGgUuUGGUGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 7177 | 0.7 | 0.892099 |
Target: 5'- cCGGGCcccGAGGAccuCCCGGGCCcaaggGCCCu -3' miRNA: 3'- uGCCCG---CUUCUuauGGGUUUGG-----UGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 53449 | 0.69 | 0.91159 |
Target: 5'- aGCGGGCGGccgaAGAGauUGCggAAGCCGCCa -3' miRNA: 3'- -UGCCCGCU----UCUU--AUGggUUUGGUGGg -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 23650 | 0.69 | 0.91402 |
Target: 5'- uGCGGgguucgcuacguaucGCGuGAGAuccaaacUGCCCAAACUGCCCa -3' miRNA: 3'- -UGCC---------------CGC-UUCUu------AUGGGUUUGGUGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 50165 | 0.69 | 0.923341 |
Target: 5'- cGCGGGCcgucuuUACCCAuAgCGCCCu -3' miRNA: 3'- -UGCCCGcuucuuAUGGGUuUgGUGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 74951 | 0.69 | 0.928839 |
Target: 5'- gACGGGCGcGGAGguuccuuuggGCUCAAAUuaUACCCc -3' miRNA: 3'- -UGCCCGCuUCUUa---------UGGGUUUG--GUGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 63625 | 0.68 | 0.934085 |
Target: 5'- cAC-GGCGguGGAUGCCgAuuuacuGGCCGCCCu -3' miRNA: 3'- -UGcCCGCuuCUUAUGGgU------UUGGUGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 69447 | 0.68 | 0.943825 |
Target: 5'- aACGGuGgGAaaAGAuUACCuCGAuCCGCCCg -3' miRNA: 3'- -UGCC-CgCU--UCUuAUGG-GUUuGGUGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 130126 | 0.68 | 0.948322 |
Target: 5'- aACGucauGGCG-GGAAUGCCgGAGCC-CCUg -3' miRNA: 3'- -UGC----CCGCuUCUUAUGGgUUUGGuGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 41820 | 0.68 | 0.952573 |
Target: 5'- cCGGGCccGAGAggGCCCGcggguCCAUCCg -3' miRNA: 3'- uGCCCGc-UUCUuaUGGGUuu---GGUGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 119620 | 0.68 | 0.954206 |
Target: 5'- -gGGGCGGAGGggcgugcuguAUGCCUGGuauucucauucuauCCACCCc -3' miRNA: 3'- ugCCCGCUUCU----------UAUGGGUUu-------------GGUGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 98078 | 0.68 | 0.956193 |
Target: 5'- aGCGcGGUGAcGAGUucgaaugGCCCAAAUUagaGCCCg -3' miRNA: 3'- -UGC-CCGCUuCUUA-------UGGGUUUGG---UGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 38939 | 0.68 | 0.956583 |
Target: 5'- uCGGGUGcGGAAcACCCAuugcuuguaacGAUgGCCCu -3' miRNA: 3'- uGCCCGCuUCUUaUGGGU-----------UUGgUGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 82026 | 0.67 | 0.960356 |
Target: 5'- aGCGGGgGAuGggUAuaacCCCAugucccuccguuAugCGCCCa -3' miRNA: 3'- -UGCCCgCUuCuuAU----GGGU------------UugGUGGG- -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 96920 | 0.67 | 0.960356 |
Target: 5'- gACGGGCGucacGGGAUACgCCGAACgCAa-- -3' miRNA: 3'- -UGCCCGCu---UCUUAUG-GGUUUG-GUggg -5' |
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30600 | 5' | -52.2 | NC_006549.1 | + | 36321 | 0.67 | 0.963896 |
Target: 5'- cGCGaaaaauGCGAAGAGUuucucgaaaACCCGGGCaucaACCCa -3' miRNA: 3'- -UGCc-----CGCUUCUUA---------UGGGUUUGg---UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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