miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30602 3' -58.2 NC_006549.1 + 76313 0.68 0.712532
Target:  5'- cGUGAAACgaCCCGUCaaAACCCAUGUGCc -3'
miRNA:   3'- -CGCUUUGg-GGGCGGc-UUGGGUGCGUG- -5'
30602 3' -58.2 NC_006549.1 + 132551 0.68 0.722315
Target:  5'- uCGuucGCCCgCGUCGAAuCCCACGC-Cg -3'
miRNA:   3'- cGCuu-UGGGgGCGGCUU-GGGUGCGuG- -5'
30602 3' -58.2 NC_006549.1 + 6585 0.68 0.722315
Target:  5'- cGCaGGACCaCCCGCCGAACCgAUa--- -3'
miRNA:   3'- -CGcUUUGG-GGGCGGCUUGGgUGcgug -5'
30602 3' -58.2 NC_006549.1 + 51003 0.67 0.75023
Target:  5'- cCGggGCCCCUuaggGCCGAucggcccuaagggGCCCAUGgGg -3'
miRNA:   3'- cGCuuUGGGGG----CGGCU-------------UGGGUGCgUg -5'
30602 3' -58.2 NC_006549.1 + 96587 0.67 0.769927
Target:  5'- uCGAGugCUCCGCgGAucgcucgcuaACCCuuGCGCu -3'
miRNA:   3'- cGCUUugGGGGCGgCU----------UGGGugCGUG- -5'
30602 3' -58.2 NC_006549.1 + 20439 0.67 0.769927
Target:  5'- aGCGAcucugacgaacAACCCUCGuUCGAAgcucaaaaauuuCCCGCGUGCg -3'
miRNA:   3'- -CGCU-----------UUGGGGGC-GGCUU------------GGGUGCGUG- -5'
30602 3' -58.2 NC_006549.1 + 69620 0.67 0.7882
Target:  5'- aUGAGACgUauGCUGGACCC-CGCGCg -3'
miRNA:   3'- cGCUUUGgGggCGGCUUGGGuGCGUG- -5'
30602 3' -58.2 NC_006549.1 + 16504 0.66 0.800671
Target:  5'- cGCaGGAACCUaucccauucauacggCUGCUGucgccuCCCGCGCACa -3'
miRNA:   3'- -CG-CUUUGGG---------------GGCGGCuu----GGGUGCGUG- -5'
30602 3' -58.2 NC_006549.1 + 117026 0.66 0.805928
Target:  5'- gGUGgcGCCCCCGUCaucucuGCCaaaaguggaACGCACa -3'
miRNA:   3'- -CGCuuUGGGGGCGGcu----UGGg--------UGCGUG- -5'
30602 3' -58.2 NC_006549.1 + 11131 0.66 0.814567
Target:  5'- cCGAAAgCCCCGUgGcggaacccaAACCCACcaggGCGCg -3'
miRNA:   3'- cGCUUUgGGGGCGgC---------UUGGGUG----CGUG- -5'
30602 3' -58.2 NC_006549.1 + 40960 0.66 0.831356
Target:  5'- cGCaAGGCUCCC-CUGGGCUCACGgGCc -3'
miRNA:   3'- -CGcUUUGGGGGcGGCUUGGGUGCgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.