miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30609 3' -49.3 NC_006549.1 + 7023 0.66 0.998333
Target:  5'- cGCGGGGGUuaGGGGAGAUgcCGgcGCuCCg -3'
miRNA:   3'- -CGUUUCCGggCUCUUUUA--GCaaCG-GG- -5'
30609 3' -49.3 NC_006549.1 + 46954 0.66 0.998333
Target:  5'- -aAGAGGCaaCCGGGcGAAUCGguaGCCg -3'
miRNA:   3'- cgUUUCCG--GGCUCuUUUAGCaa-CGGg -5'
30609 3' -49.3 NC_006549.1 + 6923 0.66 0.997605
Target:  5'- --cAGGGCCCGAGAGGA-----GCUCg -3'
miRNA:   3'- cguUUCCGGGCUCUUUUagcaaCGGG- -5'
30609 3' -49.3 NC_006549.1 + 7618 0.66 0.996628
Target:  5'- uGCAAGGGCUaaaGGGAGAucaCGUgcGCaCCa -3'
miRNA:   3'- -CGUUUCCGGg--CUCUUUua-GCAa-CG-GG- -5'
30609 3' -49.3 NC_006549.1 + 11944 0.67 0.995344
Target:  5'- -aGGAGGCCCaGAGgcAGucUCGUUuCCCc -3'
miRNA:   3'- cgUUUCCGGG-CUCuuUU--AGCAAcGGG- -5'
30609 3' -49.3 NC_006549.1 + 40649 0.67 0.994566
Target:  5'- -gGAGGGCCCaGAGGAGAaaCGggggacaccgGCCCc -3'
miRNA:   3'- cgUUUCCGGG-CUCUUUUa-GCaa--------CGGG- -5'
30609 3' -49.3 NC_006549.1 + 60432 0.67 0.994566
Target:  5'- cGUggGGGCUcuCGAGAugAAAUCuuccaucacGUUGUCCa -3'
miRNA:   3'- -CGuuUCCGG--GCUCU--UUUAG---------CAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 12214 0.67 0.993498
Target:  5'- -aGGAGGCCCaGAGAcagucccgagAGGUCGagggacaagagGCCCg -3'
miRNA:   3'- cgUUUCCGGG-CUCU----------UUUAGCaa---------CGGG- -5'
30609 3' -49.3 NC_006549.1 + 12160 0.67 0.993498
Target:  5'- -aGGAGGCCCaGAGAcagucccgagAGGUCGagggacaagagGCCCg -3'
miRNA:   3'- cgUUUCCGGG-CUCU----------UUUAGCaa---------CGGG- -5'
30609 3' -49.3 NC_006549.1 + 12106 0.67 0.993498
Target:  5'- -aGGAGGCCCaGAGAcagucccgagAGGUCGagggacaagagGCCCg -3'
miRNA:   3'- cgUUUCCGGG-CUCU----------UUUAGCaa---------CGGG- -5'
30609 3' -49.3 NC_006549.1 + 12052 0.67 0.993498
Target:  5'- -aGGAGGCCCaGAGAcagucccgagAGGUCGagggacaagagGCCCg -3'
miRNA:   3'- cgUUUCCGGG-CUCU----------UUUAGCaa---------CGGG- -5'
30609 3' -49.3 NC_006549.1 + 11998 0.67 0.993498
Target:  5'- -aGGAGGCCCaGAGAcagucccgagAGGUCGagggacaagagGCCCg -3'
miRNA:   3'- cgUUUCCGGG-CUCU----------UUUAGCaa---------CGGG- -5'
30609 3' -49.3 NC_006549.1 + 1943 0.67 0.992697
Target:  5'- -----cGCCCGAGcgcGUCGUgacGCCCa -3'
miRNA:   3'- cguuucCGGGCUCuuuUAGCAa--CGGG- -5'
30609 3' -49.3 NC_006549.1 + 21233 0.68 0.991587
Target:  5'- gGCAGGGcGgCCGAGG----UGUUGUCCg -3'
miRNA:   3'- -CGUUUC-CgGGCUCUuuuaGCAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 72135 0.68 0.991587
Target:  5'- aGCAcAGcGCCCGAGAcAAUaGUgGCCa -3'
miRNA:   3'- -CGUuUC-CGGGCUCUuUUAgCAaCGGg -5'
30609 3' -49.3 NC_006549.1 + 9703 0.68 0.988073
Target:  5'- gGCAGAGGCUCaacccgucaaGAGAAAAcaaccggagccgccCGUUGCCg -3'
miRNA:   3'- -CGUUUCCGGG----------CUCUUUUa-------------GCAACGGg -5'
30609 3' -49.3 NC_006549.1 + 126761 0.68 0.987444
Target:  5'- cCAGAauGGCCgCGuuGAAAUgGUUGCCUa -3'
miRNA:   3'- cGUUU--CCGG-GCucUUUUAgCAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 74843 0.7 0.971811
Target:  5'- -gGAAGGCCCGGGuggcuAAUCacUGCCg -3'
miRNA:   3'- cgUUUCCGGGCUCuu---UUAGcaACGGg -5'
30609 3' -49.3 NC_006549.1 + 7949 0.7 0.961982
Target:  5'- cGCGGAGcGCCCGgacccgauGGGGAGcCGggGCCUg -3'
miRNA:   3'- -CGUUUC-CGGGC--------UCUUUUaGCaaCGGG- -5'
30609 3' -49.3 NC_006549.1 + 41824 0.71 0.945498
Target:  5'- gGCGccGGGCCCGAGAGGGccCGcggGUCCa -3'
miRNA:   3'- -CGUu-UCCGGGCUCUUUUa-GCaa-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.