miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30609 3' -49.3 NC_006549.1 + 126761 0.68 0.987444
Target:  5'- cCAGAauGGCCgCGuuGAAAUgGUUGCCUa -3'
miRNA:   3'- cGUUU--CCGG-GCucUUUUAgCAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 102598 0.72 0.919101
Target:  5'- cCGGGGuGCCCGGGAGGAccucUCGg-GCCCc -3'
miRNA:   3'- cGUUUC-CGGGCUCUUUU----AGCaaCGGG- -5'
30609 3' -49.3 NC_006549.1 + 100249 0.81 0.522076
Target:  5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3'
miRNA:   3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 100187 0.81 0.522076
Target:  5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3'
miRNA:   3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 100124 0.81 0.522076
Target:  5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3'
miRNA:   3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 100061 0.81 0.522076
Target:  5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3'
miRNA:   3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 99998 0.81 0.522076
Target:  5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3'
miRNA:   3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 99935 0.81 0.522076
Target:  5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3'
miRNA:   3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 99872 0.81 0.522076
Target:  5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3'
miRNA:   3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 99809 0.81 0.522076
Target:  5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3'
miRNA:   3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 99746 0.81 0.522076
Target:  5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3'
miRNA:   3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 99683 0.81 0.522076
Target:  5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3'
miRNA:   3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 99620 0.81 0.522076
Target:  5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3'
miRNA:   3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 81063 1.17 0.00409
Target:  5'- cGCAAAGGCCCGAGAAAAUCGUUGCCCg -3'
miRNA:   3'- -CGUUUCCGGGCUCUUUUAGCAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 74843 0.7 0.971811
Target:  5'- -gGAAGGCCCGGGuggcuAAUCacUGCCg -3'
miRNA:   3'- cgUUUCCGGGCUCuu---UUAGcaACGGg -5'
30609 3' -49.3 NC_006549.1 + 72135 0.68 0.991587
Target:  5'- aGCAcAGcGCCCGAGAcAAUaGUgGCCa -3'
miRNA:   3'- -CGUuUC-CGGGCUCUuUUAgCAaCGGg -5'
30609 3' -49.3 NC_006549.1 + 60432 0.67 0.994566
Target:  5'- cGUggGGGCUcuCGAGAugAAAUCuuccaucacGUUGUCCa -3'
miRNA:   3'- -CGuuUCCGG--GCUCU--UUUAG---------CAACGGG- -5'
30609 3' -49.3 NC_006549.1 + 49861 0.72 0.924905
Target:  5'- cCGGGGGCCCaGGGggGccCGgagGCCCu -3'
miRNA:   3'- cGUUUCCGGG-CUCuuUuaGCaa-CGGG- -5'
30609 3' -49.3 NC_006549.1 + 49724 0.73 0.89328
Target:  5'- cGC--GGGCCCGuGggGccCGUUGgCCCg -3'
miRNA:   3'- -CGuuUCCGGGCuCuuUuaGCAAC-GGG- -5'
30609 3' -49.3 NC_006549.1 + 46954 0.66 0.998333
Target:  5'- -aAGAGGCaaCCGGGcGAAUCGguaGCCg -3'
miRNA:   3'- cgUUUCCG--GGCUCuUUUAGCaa-CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.