miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30629 5' -52.7 NC_006549.1 + 60975 0.67 0.961487
Target:  5'- gGCGGCcUGcCGCaCGAUCuCCAucuggucuauuucAAACGCg -3'
miRNA:   3'- gCGCCGcAU-GCG-GUUAG-GGU-------------UUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 64010 0.75 0.638419
Target:  5'- cCGUGGCGUACGCgGugCCCGcguucuccggcaaAAACGCc -3'
miRNA:   3'- -GCGCCGCAUGCGgUuaGGGU-------------UUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 64659 0.69 0.90839
Target:  5'- aCGCGGUcucccCGCUAGUCUgauUAGAACGCg -3'
miRNA:   3'- -GCGCCGcau--GCGGUUAGG---GUUUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 68175 0.67 0.95819
Target:  5'- aGUGGUGUAaGau-AUCCCAcgGCGCg -3'
miRNA:   3'- gCGCCGCAUgCgguUAGGGUuuUGCG- -5'
30629 5' -52.7 NC_006549.1 + 70553 0.68 0.94309
Target:  5'- aGCGGCGcucaucaucgaacagUACuCCAAcugCCCAgaAGACGCu -3'
miRNA:   3'- gCGCCGC---------------AUGcGGUUa--GGGU--UUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 72517 0.74 0.701667
Target:  5'- cCGCcGCGcGCGCCAcguuUCCCAu-GCGCg -3'
miRNA:   3'- -GCGcCGCaUGCGGUu---AGGGUuuUGCG- -5'
30629 5' -52.7 NC_006549.1 + 78027 0.66 0.981385
Target:  5'- uGCGGUagccGCGCC--UCCCGacggGAugGCa -3'
miRNA:   3'- gCGCCGca--UGCGGuuAGGGU----UUugCG- -5'
30629 5' -52.7 NC_006549.1 + 78316 0.72 0.799409
Target:  5'- aGCuGCcgGUGCGCCAGUUCCGccaugguGGCGCg -3'
miRNA:   3'- gCGcCG--CAUGCGGUUAGGGUu------UUGCG- -5'
30629 5' -52.7 NC_006549.1 + 79631 0.69 0.913883
Target:  5'- uCGUGGgGUcCGCCAccgGUCCCAucaaaaaGGAuCGCg -3'
miRNA:   3'- -GCGCCgCAuGCGGU---UAGGGU-------UUU-GCG- -5'
30629 5' -52.7 NC_006549.1 + 83916 0.69 0.902053
Target:  5'- -aCGGCGUGCGUCAagcuGUCCguGGACa- -3'
miRNA:   3'- gcGCCGCAUGCGGU----UAGGguUUUGcg -5'
30629 5' -52.7 NC_006549.1 + 98999 0.7 0.851136
Target:  5'- uGUGGCGcguugaGCGCgGcaCCCAAGGCGCc -3'
miRNA:   3'- gCGCCGCa-----UGCGgUuaGGGUUUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 107437 0.66 0.97919
Target:  5'- uGCGaGCGUACGCUGgccGUCCguagAGGACGa -3'
miRNA:   3'- gCGC-CGCAUGCGGU---UAGGg---UUUUGCg -5'
30629 5' -52.7 NC_006549.1 + 107589 0.68 0.925922
Target:  5'- gGCGGCGUGUGgCAagGUCCCAuacccAACGa -3'
miRNA:   3'- gCGCCGCAUGCgGU--UAGGGUu----UUGCg -5'
30629 5' -52.7 NC_006549.1 + 109385 0.66 0.980746
Target:  5'- aCGCGGgGUGCGUauaacCCCAcgugccuccuauaaAAGCGUu -3'
miRNA:   3'- -GCGCCgCAUGCGguua-GGGU--------------UUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 113723 0.66 0.968468
Target:  5'- uGCGGCuUAUGCC-GUCCCucucucuGCGg -3'
miRNA:   3'- gCGCCGcAUGCGGuUAGGGuuu----UGCg -5'
30629 5' -52.7 NC_006549.1 + 115021 0.68 0.941219
Target:  5'- uCGCGGCGUggaccgccuuuACGCCcccuucUCCUuugcACGCa -3'
miRNA:   3'- -GCGCCGCA-----------UGCGGuu----AGGGuuu-UGCG- -5'
30629 5' -52.7 NC_006549.1 + 116949 0.69 0.90839
Target:  5'- aGCGGCGgGCGCguAUCU----GCGCa -3'
miRNA:   3'- gCGCCGCaUGCGguUAGGguuuUGCG- -5'
30629 5' -52.7 NC_006549.1 + 122544 0.66 0.971455
Target:  5'- aGCGGCG-ACaGCCu-UCUCAGAuGCGUc -3'
miRNA:   3'- gCGCCGCaUG-CGGuuAGGGUUU-UGCG- -5'
30629 5' -52.7 NC_006549.1 + 126936 0.66 0.976808
Target:  5'- uGUGGCGUGaaauaCAcgCCCgAAGACGUg -3'
miRNA:   3'- gCGCCGCAUgcg--GUuaGGG-UUUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 128778 0.74 0.701667
Target:  5'- aGCGGCGUAuacgaaccUGCCGucUCCCAuu-CGCu -3'
miRNA:   3'- gCGCCGCAU--------GCGGUu-AGGGUuuuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.