miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30629 5' -52.7 NC_006549.1 + 5595 0.72 0.799409
Target:  5'- -uUGGCGUACGCCGcgaGUCUCuccgggguGGCGCu -3'
miRNA:   3'- gcGCCGCAUGCGGU---UAGGGuu------UUGCG- -5'
30629 5' -52.7 NC_006549.1 + 10010 0.66 0.968468
Target:  5'- aCGCGGUGggaaGCC---CCCcuAGCGCg -3'
miRNA:   3'- -GCGCCGCaug-CGGuuaGGGuuUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 11122 0.69 0.902053
Target:  5'- cCGUGGCGgaAC-CCAAaCCCAccaGGGCGCg -3'
miRNA:   3'- -GCGCCGCa-UGcGGUUaGGGU---UUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 13700 0.67 0.954306
Target:  5'- uCGCGGCGUG-GCC--UUCCA--GCGUu -3'
miRNA:   3'- -GCGCCGCAUgCGGuuAGGGUuuUGCG- -5'
30629 5' -52.7 NC_006549.1 + 14213 0.67 0.95705
Target:  5'- --aGGCGUACGCCA--CCCucuuguuuuuaaacGAAGCGg -3'
miRNA:   3'- gcgCCGCAUGCGGUuaGGG--------------UUUUGCg -5'
30629 5' -52.7 NC_006549.1 + 26823 0.71 0.826098
Target:  5'- -aCGGCGUACGCCGcgUaCAAAgauuuGCGCa -3'
miRNA:   3'- gcGCCGCAUGCGGUuaGgGUUU-----UGCG- -5'
30629 5' -52.7 NC_006549.1 + 40729 0.68 0.924269
Target:  5'- cCGuCGGCGcgagucACGUCGGUCCCGAGGgaaccccgggaccuCGCg -3'
miRNA:   3'- -GC-GCCGCa-----UGCGGUUAGGGUUUU--------------GCG- -5'
30629 5' -52.7 NC_006549.1 + 41848 0.66 0.975287
Target:  5'- aGCGGgcccgcgaggaccccCGgggGCGCCGggCCCGAGAgggccCGCg -3'
miRNA:   3'- gCGCC---------------GCa--UGCGGUuaGGGUUUU-----GCG- -5'
30629 5' -52.7 NC_006549.1 + 44678 0.68 0.941219
Target:  5'- aCGCGG-GUACGUacguuUCUCGAAACuGCa -3'
miRNA:   3'- -GCGCCgCAUGCGguu--AGGGUUUUG-CG- -5'
30629 5' -52.7 NC_006549.1 + 46012 0.66 0.981385
Target:  5'- aCGCGGCcuuuagagaGUGgGCCAcgCUCAAcugccCGCa -3'
miRNA:   3'- -GCGCCG---------CAUgCGGUuaGGGUUuu---GCG- -5'
30629 5' -52.7 NC_006549.1 + 51341 0.69 0.920326
Target:  5'- uGCGGCGUGgGCC-GUCC----ACGUg -3'
miRNA:   3'- gCGCCGCAUgCGGuUAGGguuuUGCG- -5'
30629 5' -52.7 NC_006549.1 + 52309 0.67 0.965266
Target:  5'- gGCGGCGUGCGCauggCCCc------ -3'
miRNA:   3'- gCGCCGCAUGCGguuaGGGuuuugcg -5'
30629 5' -52.7 NC_006549.1 + 53317 0.7 0.851136
Target:  5'- aCGCGGCGcgcACGgCAGaCCCGAAGaggcCGCg -3'
miRNA:   3'- -GCGCCGCa--UGCgGUUaGGGUUUU----GCG- -5'
30629 5' -52.7 NC_006549.1 + 59045 0.68 0.925373
Target:  5'- gGUGGCGUGgGgCGAagagggcUCCUggGugGCg -3'
miRNA:   3'- gCGCCGCAUgCgGUU-------AGGGuuUugCG- -5'
30629 5' -52.7 NC_006549.1 + 59099 0.68 0.925373
Target:  5'- gGUGGCGUGgGgCGAagagggcUCCUggGugGCg -3'
miRNA:   3'- gCGCCGCAUgCgGUU-------AGGGuuUugCG- -5'
30629 5' -52.7 NC_006549.1 + 59153 0.68 0.925373
Target:  5'- gGUGGCGUGgGgCGAagagggcUCCUggGugGCg -3'
miRNA:   3'- gCGCCGCAUgCgGUU-------AGGGuuUugCG- -5'
30629 5' -52.7 NC_006549.1 + 59207 0.68 0.925373
Target:  5'- gGUGGCGUGgGgCGAagagggcUCCUggGugGCg -3'
miRNA:   3'- gCGCCGCAUgCgGUU-------AGGGuuUugCG- -5'
30629 5' -52.7 NC_006549.1 + 59261 0.68 0.925373
Target:  5'- gGUGGCGUGgGgCGAagagggcUCCUggGugGCg -3'
miRNA:   3'- gCGCCGCAUgCgGUU-------AGGGuuUugCG- -5'
30629 5' -52.7 NC_006549.1 + 59938 0.69 0.914481
Target:  5'- gGCGGCGUACGag---CCUc-GACGCa -3'
miRNA:   3'- gCGCCGCAUGCgguuaGGGuuUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 60450 0.79 0.420965
Target:  5'- gGCGGUGUGCGCCGAuagcgugggggcUCUCGAGAUGa -3'
miRNA:   3'- gCGCCGCAUGCGGUU------------AGGGUUUUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.