miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30629 5' -52.7 NC_006549.1 + 60450 0.79 0.420965
Target:  5'- gGCGGUGUGCGCCGAuagcgugggggcUCUCGAGAUGa -3'
miRNA:   3'- gCGCCGCAUGCGGUU------------AGGGUUUUGCg -5'
30629 5' -52.7 NC_006549.1 + 64010 0.75 0.638419
Target:  5'- cCGUGGCGUACGCgGugCCCGcguucuccggcaaAAACGCc -3'
miRNA:   3'- -GCGCCGCAUGCGgUuaGGGU-------------UUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 128778 0.74 0.701667
Target:  5'- aGCGGCGUAuacgaaccUGCCGucUCCCAuu-CGCu -3'
miRNA:   3'- gCGCCGCAU--------GCGGUu-AGGGUuuuGCG- -5'
30629 5' -52.7 NC_006549.1 + 72517 0.74 0.701667
Target:  5'- cCGCcGCGcGCGCCAcguuUCCCAu-GCGCg -3'
miRNA:   3'- -GCGcCGCaUGCGGUu---AGGGUuuUGCG- -5'
30629 5' -52.7 NC_006549.1 + 5595 0.72 0.799409
Target:  5'- -uUGGCGUACGCCGcgaGUCUCuccgggguGGCGCu -3'
miRNA:   3'- gcGCCGCAUGCGGU---UAGGGuu------UUGCG- -5'
30629 5' -52.7 NC_006549.1 + 78316 0.72 0.799409
Target:  5'- aGCuGCcgGUGCGCCAGUUCCGccaugguGGCGCg -3'
miRNA:   3'- gCGcCG--CAUGCGGUUAGGGUu------UUGCG- -5'
30629 5' -52.7 NC_006549.1 + 26823 0.71 0.826098
Target:  5'- -aCGGCGUACGCCGcgUaCAAAgauuuGCGCa -3'
miRNA:   3'- gcGCCGCAUGCGGUuaGgGUUU-----UGCG- -5'
30629 5' -52.7 NC_006549.1 + 134747 0.7 0.851136
Target:  5'- aGCGGgGUGCGCCA-UCCguAGuuaGCc -3'
miRNA:   3'- gCGCCgCAUGCGGUuAGGguUUug-CG- -5'
30629 5' -52.7 NC_006549.1 + 98999 0.7 0.851136
Target:  5'- uGUGGCGcguugaGCGCgGcaCCCAAGGCGCc -3'
miRNA:   3'- gCGCCGCa-----UGCGgUuaGGGUUUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 53317 0.7 0.851136
Target:  5'- aCGCGGCGcgcACGgCAGaCCCGAAGaggcCGCg -3'
miRNA:   3'- -GCGCCGCa--UGCgGUUaGGGUUUU----GCG- -5'
30629 5' -52.7 NC_006549.1 + 130193 0.69 0.902053
Target:  5'- --aGGCGUGCGCCAGaugcUCggaCGAAACGg -3'
miRNA:   3'- gcgCCGCAUGCGGUU----AGg--GUUUUGCg -5'
30629 5' -52.7 NC_006549.1 + 11122 0.69 0.902053
Target:  5'- cCGUGGCGgaAC-CCAAaCCCAccaGGGCGCg -3'
miRNA:   3'- -GCGCCGCa-UGcGGUUaGGGU---UUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 83916 0.69 0.902053
Target:  5'- -aCGGCGUGCGUCAagcuGUCCguGGACa- -3'
miRNA:   3'- gcGCCGCAUGCGGU----UAGGguUUUGcg -5'
30629 5' -52.7 NC_006549.1 + 116949 0.69 0.90839
Target:  5'- aGCGGCGgGCGCguAUCU----GCGCa -3'
miRNA:   3'- gCGCCGCaUGCGguUAGGguuuUGCG- -5'
30629 5' -52.7 NC_006549.1 + 64659 0.69 0.90839
Target:  5'- aCGCGGUcucccCGCUAGUCUgauUAGAACGCg -3'
miRNA:   3'- -GCGCCGcau--GCGGUUAGG---GUUUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 79631 0.69 0.913883
Target:  5'- uCGUGGgGUcCGCCAccgGUCCCAucaaaaaGGAuCGCg -3'
miRNA:   3'- -GCGCCgCAuGCGGU---UAGGGU-------UUU-GCG- -5'
30629 5' -52.7 NC_006549.1 + 59938 0.69 0.914481
Target:  5'- gGCGGCGUACGag---CCUc-GACGCa -3'
miRNA:   3'- gCGCCGCAUGCgguuaGGGuuUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 51341 0.69 0.920326
Target:  5'- uGCGGCGUGgGCC-GUCC----ACGUg -3'
miRNA:   3'- gCGCCGCAUgCGGuUAGGguuuUGCG- -5'
30629 5' -52.7 NC_006549.1 + 40729 0.68 0.924269
Target:  5'- cCGuCGGCGcgagucACGUCGGUCCCGAGGgaaccccgggaccuCGCg -3'
miRNA:   3'- -GC-GCCGCa-----UGCGGUUAGGGUUUU--------------GCG- -5'
30629 5' -52.7 NC_006549.1 + 59207 0.68 0.925373
Target:  5'- gGUGGCGUGgGgCGAagagggcUCCUggGugGCg -3'
miRNA:   3'- gCGCCGCAUgCgGUU-------AGGGuuUugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.