Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30630 | 5' | -63.9 | NC_006549.1 | + | 102577 | 0.79 | 0.096848 |
Target: 5'- cUCGGGCCCcuggGUccagcgcagcccuuuGGGCCCGCGGGgCCg -3' miRNA: 3'- -AGCCCGGGaa--CG---------------CCUGGGCGCCCaGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 102457 | 0.7 | 0.362646 |
Target: 5'- -gGGGCgCCa-GCuGGGCCgGgGGGUCCa -3' miRNA: 3'- agCCCG-GGaaCG-CCUGGgCgCCCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 102389 | 0.75 | 0.168414 |
Target: 5'- --uGGCCCUUGUGGACCCaUGGGgCCc -3' miRNA: 3'- agcCCGGGAACGCCUGGGcGCCCaGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 102277 | 0.67 | 0.514549 |
Target: 5'- cCGGGCUCUccucUG-GGGCCUG-GGaGUCCu -3' miRNA: 3'- aGCCCGGGA----ACgCCUGGGCgCC-CAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 83621 | 0.67 | 0.523796 |
Target: 5'- cCGGGuUUCUUGCGGGCCgaaGGGUUg -3' miRNA: 3'- aGCCC-GGGAACGCCUGGgcgCCCAGg -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 50973 | 0.68 | 0.460608 |
Target: 5'- -gGGGCCCaUG-GGGCCCuuCGGG-CCu -3' miRNA: 3'- agCCCGGGaACgCCUGGGc-GCCCaGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 50910 | 0.74 | 0.198798 |
Target: 5'- gUCuGGCCCagGCGuuCCUGUGGGUCCu -3' miRNA: 3'- -AGcCCGGGaaCGCcuGGGCGCCCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 50855 | 0.73 | 0.213225 |
Target: 5'- aCGGaCCCagGUGGGCCCuuGGGUCCu -3' miRNA: 3'- aGCCcGGGaaCGCCUGGGcgCCCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 50802 | 0.82 | 0.05787 |
Target: 5'- cUUGGGUCCUgGCGGGCCCGCuGGG-CCu -3' miRNA: 3'- -AGCCCGGGAaCGCCUGGGCG-CCCaGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 50564 | 0.69 | 0.401687 |
Target: 5'- gUUGGGCCaaccugacCUUGaGGcCCCGCcGGUCCg -3' miRNA: 3'- -AGCCCGG--------GAACgCCuGGGCGcCCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 50526 | 0.67 | 0.523796 |
Target: 5'- -gGGGCCCguuUGU---CCgGUGGGUCCa -3' miRNA: 3'- agCCCGGGa--ACGccuGGgCGCCCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 50491 | 0.71 | 0.299252 |
Target: 5'- cCGGGCCauc-UGGcCCCGCGGGgCCa -3' miRNA: 3'- aGCCCGGgaacGCCuGGGCGCCCaGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 50447 | 0.69 | 0.401687 |
Target: 5'- aCuGGCCCcgcCGGACCgGCGGGgCCc -3' miRNA: 3'- aGcCCGGGaacGCCUGGgCGCCCaGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 50085 | 0.71 | 0.291478 |
Target: 5'- uUUGGGUCCcUGCucuccgcugucACCCGUGGGUCCu -3' miRNA: 3'- -AGCCCGGGaACGcc---------UGGGCGCCCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 49876 | 0.76 | 0.152978 |
Target: 5'- aCGGaCCCUUG-GGGCCCGgGGGcCCa -3' miRNA: 3'- aGCCcGGGAACgCCUGGGCgCCCaGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 49805 | 0.7 | 0.355161 |
Target: 5'- gUGGGCCCa-GCuGGGCCCaCGGGaCCc -3' miRNA: 3'- aGCCCGGGaaCG-CCUGGGcGCCCaGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 49723 | 0.79 | 0.086534 |
Target: 5'- gCGGGCCCgUGgGGcccguugGCCCGCGaGGUCCc -3' miRNA: 3'- aGCCCGGGaACgCC-------UGGGCGC-CCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 49679 | 0.77 | 0.116946 |
Target: 5'- cUGGGaCCUUGCGGACCCacgguGCccuuGGGUCCg -3' miRNA: 3'- aGCCCgGGAACGCCUGGG-----CG----CCCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 41847 | 0.7 | 0.340519 |
Target: 5'- gCGGGCCCgcgaGGACCCcCGGGg-- -3' miRNA: 3'- aGCCCGGGaacgCCUGGGcGCCCagg -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 41820 | 0.91 | 0.011938 |
Target: 5'- cCGGGCCCgagaGGGCCCGCGGGUCCa -3' miRNA: 3'- aGCCCGGGaacgCCUGGGCGCCCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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