Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30632 | 5' | -65.5 | NC_006549.1 | + | 7691 | 0.66 | 0.467772 |
Target: 5'- --aUCAGGGGGGCUUUUGGaCCCgaCGGa -3' miRNA: 3'- aaaGGUCCCCCCGGGAGUCcGGG--GCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 50506 | 0.66 | 0.432972 |
Target: 5'- -gUCCAGGuGGaccagccgGGCCaUCuGGCCCCGcGg -3' miRNA: 3'- aaAGGUCC-CC--------CCGGgAGuCCGGGGC-C- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 50904 | 0.66 | 0.432972 |
Target: 5'- --cCCAGGcguuccuguGGGUCCUCugGGGCCuuGGg -3' miRNA: 3'- aaaGGUCCc--------CCCGGGAG--UCCGGggCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 100219 | 0.67 | 0.375889 |
Target: 5'- -cUCUGGcuGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc-CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 7537 | 0.67 | 0.383727 |
Target: 5'- aUUCUAGcccGGuGGGCCCUCagGGGCCagaGGg -3' miRNA: 3'- aAAGGUC---CC-CCCGGGAG--UCCGGgg-CC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 100282 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 100157 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 100094 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 100031 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 99968 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 99905 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 99842 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 99779 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 99716 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 99653 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 40989 | 0.68 | 0.331171 |
Target: 5'- -aUCCcuGGGGGCCC-CcGGUCCCa- -3' miRNA: 3'- aaAGGucCCCCCGGGaGuCCGGGGcc -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 50253 | 0.68 | 0.359028 |
Target: 5'- uUUUCCAGGcGGGCCagcgucucccaCGGGCCCUuGGa -3' miRNA: 3'- -AAAGGUCCcCCCGGga---------GUCCGGGG-CC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 7117 | 0.69 | 0.310324 |
Target: 5'- gUUCCGccGGGcccauGGGCCCagUCGGGCUCCaGGg -3' miRNA: 3'- aAAGGU--CCC-----CCCGGG--AGUCCGGGG-CC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 102600 | 0.71 | 0.226264 |
Target: 5'- -cUCCGGGGugcccGGGaggacCUCUCGGGCCCCuGGg -3' miRNA: 3'- aaAGGUCCC-----CCC-----GGGAGUCCGGGG-CC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 7382 | 0.71 | 0.206073 |
Target: 5'- --cCCAGGGcccgcccGGCCCUCcaGGGCCCCa- -3' miRNA: 3'- aaaGGUCCCc------CCGGGAG--UCCGGGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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