miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30652 5' -56.6 NC_006549.1 + 82827 0.66 0.860826
Target:  5'- cCGCGGGAG--CCGGCGCugCCGgaGCGGg- -3'
miRNA:   3'- -GCGUUCUUugGGCCGCG--GGU--UGCCau -5'
30652 5' -56.6 NC_006549.1 + 50981 0.66 0.860826
Target:  5'- gGCccuAAGggGCCCauGGgGCCCuuCGGg- -3'
miRNA:   3'- gCG---UUCuuUGGG--CCgCGGGuuGCCau -5'
30652 5' -56.6 NC_006549.1 + 21276 0.66 0.853038
Target:  5'- cCGCucGAccAGCgCGGCGCCCAauauaggcucggGCGGc- -3'
miRNA:   3'- -GCGuuCU--UUGgGCCGCGGGU------------UGCCau -5'
30652 5' -56.6 NC_006549.1 + 60487 0.67 0.828487
Target:  5'- -cCAAGGAucucucGCCCgaGGCGCCCGcgacggcguugGCGGUGu -3'
miRNA:   3'- gcGUUCUU------UGGG--CCGCGGGU-----------UGCCAU- -5'
30652 5' -56.6 NC_006549.1 + 40598 0.67 0.819931
Target:  5'- cCGCAAGGccccCCCGG-GCCCGcCGGc- -3'
miRNA:   3'- -GCGUUCUuu--GGGCCgCGGGUuGCCau -5'
30652 5' -56.6 NC_006549.1 + 91934 0.67 0.819931
Target:  5'- gCGCAcGGAAGCCUGcGCGCCauacCGGa- -3'
miRNA:   3'- -GCGU-UCUUUGGGC-CGCGGguu-GCCau -5'
30652 5' -56.6 NC_006549.1 + 6766 0.68 0.784065
Target:  5'- -uUAAGGGACCCGcggguccgcaaGgGCCCGACGGa- -3'
miRNA:   3'- gcGUUCUUUGGGC-----------CgCGGGUUGCCau -5'
30652 5' -56.6 NC_006549.1 + 70636 0.68 0.77473
Target:  5'- gCGgAAGAGGCCgUGGCGUUguGCGGUu -3'
miRNA:   3'- -GCgUUCUUUGG-GCCGCGGguUGCCAu -5'
30652 5' -56.6 NC_006549.1 + 54132 0.69 0.696193
Target:  5'- gCGCGAGGucaGGCCC-GCGCCCGguAUGGa- -3'
miRNA:   3'- -GCGUUCU---UUGGGcCGCGGGU--UGCCau -5'
30652 5' -56.6 NC_006549.1 + 35621 0.71 0.614144
Target:  5'- cCGUGAGGGACauGGCGCCUAGCGa-- -3'
miRNA:   3'- -GCGUUCUUUGggCCGCGGGUUGCcau -5'
30652 5' -56.6 NC_006549.1 + 50878 0.71 0.603864
Target:  5'- gGCcuuGGGACCCaGGuUGCCCAACGGa- -3'
miRNA:   3'- gCGuu-CUUUGGG-CC-GCGGGUUGCCau -5'
30652 5' -56.6 NC_006549.1 + 7736 0.72 0.52297
Target:  5'- cCGCAAGGucCCCaGGgGCCCAGgGGg- -3'
miRNA:   3'- -GCGUUCUuuGGG-CCgCGGGUUgCCau -5'
30652 5' -56.6 NC_006549.1 + 124217 0.74 0.427567
Target:  5'- uGUAAGAAuaguuugGCCCGGaCGCCCAuuUGGUAa -3'
miRNA:   3'- gCGUUCUU-------UGGGCC-GCGGGUu-GCCAU- -5'
30652 5' -56.6 NC_006549.1 + 106029 0.74 0.425781
Target:  5'- aCGgAAGGAuCCCGGCGCCCAaucaccguuuugcaAUGGUu -3'
miRNA:   3'- -GCgUUCUUuGGGCCGCGGGU--------------UGCCAu -5'
30652 5' -56.6 NC_006549.1 + 41736 0.75 0.352617
Target:  5'- gGCAAGAcugGACCCaggGGCGCCC-GCGGg- -3'
miRNA:   3'- gCGUUCU---UUGGG---CCGCGGGuUGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.