miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30654 5' -66.1 NC_006549.1 + 41581 0.77 0.076503
Target:  5'- -cGGUCCCCaAGGACUUCCcGGCCUCa -3'
miRNA:   3'- gaCCGGGGGgUCCUGGAGGaCCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 41701 0.78 0.072744
Target:  5'- -cGGCCCCCCcGGcCCcCCUGGgCCCg -3'
miRNA:   3'- gaCCGGGGGGuCCuGGaGGACCgGGG- -5'
30654 5' -66.1 NC_006549.1 + 41739 0.66 0.424749
Target:  5'- uCUGGCaagacuggaCCCAGGGgCgcCCgcgGGCCCCc -3'
miRNA:   3'- -GACCGgg-------GGGUCCUgGa-GGa--CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 41845 0.7 0.249686
Target:  5'- -gGGCCCgCgAGGACCcCCgggGGCgCCg -3'
miRNA:   3'- gaCCGGGgGgUCCUGGaGGa--CCGgGG- -5'
30654 5' -66.1 NC_006549.1 + 49620 0.66 0.450175
Target:  5'- -aGGUCCUCUAGGcccggguuuGCC-CCUaGGCCCg -3'
miRNA:   3'- gaCCGGGGGGUCC---------UGGaGGA-CCGGGg -5'
30654 5' -66.1 NC_006549.1 + 49735 0.69 0.304856
Target:  5'- cCUGcGUCCCCCGcGGGCCcguggggCCcguUGGCCCg -3'
miRNA:   3'- -GAC-CGGGGGGU-CCUGGa------GG---ACCGGGg -5'
30654 5' -66.1 NC_006549.1 + 49813 0.67 0.384346
Target:  5'- uUGGUCCCgUGGGcCCagCUGGgCCCa -3'
miRNA:   3'- gACCGGGGgGUCCuGGagGACCgGGG- -5'
30654 5' -66.1 NC_006549.1 + 50136 0.69 0.298289
Target:  5'- -cGGUCCCUguGGGCCccuuugUCCUauuuGCCCCa -3'
miRNA:   3'- gaCCGGGGGguCCUGG------AGGAc---CGGGG- -5'
30654 5' -66.1 NC_006549.1 + 50226 0.66 0.43313
Target:  5'- -gGGCCCUuggacgCCAGGAgcgcccauaUCUCCgauUGGUCCCc -3'
miRNA:   3'- gaCCGGGG------GGUCCU---------GGAGG---ACCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 50375 0.67 0.383564
Target:  5'- uCUGGCCCgggaggaCCCucuGGGCCgUCC--GCCCCc -3'
miRNA:   3'- -GACCGGG-------GGGu--CCUGG-AGGacCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 50483 0.78 0.067436
Target:  5'- uCUGGCCCCgCGGGGCCaacgaggCCaaugggacccacUGGCCCCg -3'
miRNA:   3'- -GACCGGGGgGUCCUGGa------GG------------ACCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 50561 0.67 0.392221
Target:  5'- -gGGCCaaCCu-GACCUUgaGGCCCCg -3'
miRNA:   3'- gaCCGGggGGucCUGGAGgaCCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 50889 0.66 0.441606
Target:  5'- -gGGUCCUCUGGGGCCUUg-GGaCCCa -3'
miRNA:   3'- gaCCGGGGGGUCCUGGAGgaCCgGGG- -5'
30654 5' -66.1 NC_006549.1 + 51000 0.74 0.125752
Target:  5'- -gGGCCCCUUAGGGCCgaucGGCCCUa -3'
miRNA:   3'- gaCCGGGGGGUCCUGGaggaCCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 101926 0.66 0.43313
Target:  5'- cCUGGagaCCCgGGGGCC-CUgcaGGCCCUg -3'
miRNA:   3'- -GACCgg-GGGgUCCUGGaGGa--CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 102030 0.72 0.200199
Target:  5'- -gGGUCCCgauucuccaucgcguCCGGGugCUCCUcugGGCCCUg -3'
miRNA:   3'- gaCCGGGG---------------GGUCCugGAGGA---CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 102390 0.7 0.255385
Target:  5'- uUGGCCCUUguGGACC-CauggGGCCCg -3'
miRNA:   3'- gACCGGGGGguCCUGGaGga--CCGGGg -5'
30654 5' -66.1 NC_006549.1 + 102549 0.68 0.342222
Target:  5'- uUGGgCCCgCGGGGCCggcggaaccagguucUCCUGGUucaCCCu -3'
miRNA:   3'- gACCgGGGgGUCCUGG---------------AGGACCG---GGG- -5'
30654 5' -66.1 NC_006549.1 + 102595 0.73 0.164121
Target:  5'- -gGGUgCCCgggAGGACCUCUcgGGCCCCu -3'
miRNA:   3'- gaCCGgGGGg--UCCUGGAGGa-CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 122653 0.67 0.376576
Target:  5'- -cGGCCUUCgAGGaagcguccgugGCCUUCUGGUCCg -3'
miRNA:   3'- gaCCGGGGGgUCC-----------UGGAGGACCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.