Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30654 | 5' | -66.1 | NC_006549.1 | + | 6647 | 0.67 | 0.392221 |
Target: 5'- gCUGGCgaUCCGGGuCCUCCcgGGCCg- -3' miRNA: 3'- -GACCGggGGGUCCuGGAGGa-CCGGgg -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 6975 | 0.7 | 0.267102 |
Target: 5'- -cGGUCCUCaAGGGCCUCagGGCCCa -3' miRNA: 3'- gaCCGGGGGgUCCUGGAGgaCCGGGg -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 7002 | 0.71 | 0.227936 |
Target: 5'- -cGGCgCUCCGGGACCUCaagGaGCuCCCg -3' miRNA: 3'- gaCCGgGGGGUCCUGGAGga-C-CG-GGG- -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 7047 | 0.66 | 0.458834 |
Target: 5'- -cGGaCCCCgC-GGACC-CCgcgGGCCCg -3' miRNA: 3'- gaCC-GGGGgGuCCUGGaGGa--CCGGGg -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 7074 | 0.69 | 0.285487 |
Target: 5'- -gGGUCCCaCC-GGACCcgCCgGGCCCg -3' miRNA: 3'- gaCCGGGG-GGuCCUGGa-GGaCCGGGg -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 7149 | 0.66 | 0.450175 |
Target: 5'- -gGGCCCUCCGGGAgcggauacggUCUUguUUGGUUCCg -3' miRNA: 3'- gaCCGGGGGGUCCU----------GGAG--GACCGGGG- -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 7194 | 0.83 | 0.030521 |
Target: 5'- -cGGaCCCCgAGGACCUCCcgGGCCCCg -3' miRNA: 3'- gaCCgGGGGgUCCUGGAGGa-CCGGGG- -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 7378 | 0.78 | 0.074601 |
Target: 5'- -gGGCCCgCCC-GGcCCUCCagGGCCCCa -3' miRNA: 3'- gaCCGGG-GGGuCCuGGAGGa-CCGGGG- -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 7404 | 0.83 | 0.032135 |
Target: 5'- -cGGCCCCUC-GGACCUCaagGGCCCCa -3' miRNA: 3'- gaCCGGGGGGuCCUGGAGga-CCGGGG- -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 7453 | 0.67 | 0.376576 |
Target: 5'- aUGGCgaCCCGGGugCuaacggcaccguUCCUGGCuaCCCg -3' miRNA: 3'- gACCGggGGGUCCugG------------AGGACCG--GGG- -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 7911 | 0.7 | 0.244093 |
Target: 5'- -gGGCCCCCCuGGAaagguagaauauCUgcaggguauUCCaGGCCCCg -3' miRNA: 3'- gaCCGGGGGGuCCU------------GG---------AGGaCCGGGG- -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 40538 | 0.84 | 0.025473 |
Target: 5'- -gGGCCCCCaggagauauGGGACCcCCUGGCCCCg -3' miRNA: 3'- gaCCGGGGGg--------UCCUGGaGGACCGGGG- -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 40620 | 0.8 | 0.053661 |
Target: 5'- -cGGCCCCaCAGGGCCUCCcggaccgcaaGGCCCCc -3' miRNA: 3'- gaCCGGGGgGUCCUGGAGGa---------CCGGGG- -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 40701 | 0.7 | 0.26119 |
Target: 5'- -gGGaaCCCCGGGACCUCgCggacaaaugGGCCCg -3' miRNA: 3'- gaCCggGGGGUCCUGGAG-Ga--------CCGGGg -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 40956 | 0.72 | 0.184829 |
Target: 5'- -aGGCUCCCCuGGG-CUCacgGGCCCCc -3' miRNA: 3'- gaCCGGGGGGuCCUgGAGga-CCGGGG- -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 41001 | 0.76 | 0.098253 |
Target: 5'- -aGGCCCCCaGGGAUC-CCUgggGGCCCCc -3' miRNA: 3'- gaCCGGGGGgUCCUGGaGGA---CCGGGG- -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 41057 | 0.81 | 0.044876 |
Target: 5'- gCUGGCCCCaCAGGACCaUCC-GGCCCg -3' miRNA: 3'- -GACCGGGGgGUCCUGG-AGGaCCGGGg -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 41148 | 0.71 | 0.219695 |
Target: 5'- -gGGUCCCaCGGGACCUaggggcccgagaggaCCUaucGGCCCCg -3' miRNA: 3'- gaCCGGGGgGUCCUGGA---------------GGA---CCGGGG- -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 41279 | 0.71 | 0.203025 |
Target: 5'- -aGGCCCUCaAGGACUUCCcGGaCCCg -3' miRNA: 3'- gaCCGGGGGgUCCUGGAGGaCCgGGG- -5' |
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30654 | 5' | -66.1 | NC_006549.1 | + | 41332 | 0.66 | 0.43313 |
Target: 5'- -aGGCCUCCgGGGAaacag-GGCCCCu -3' miRNA: 3'- gaCCGGGGGgUCCUggaggaCCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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