miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30654 5' -66.1 NC_006549.1 + 40538 0.84 0.025473
Target:  5'- -gGGCCCCCaggagauauGGGACCcCCUGGCCCCg -3'
miRNA:   3'- gaCCGGGGGg--------UCCUGGaGGACCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 7194 0.83 0.030521
Target:  5'- -cGGaCCCCgAGGACCUCCcgGGCCCCg -3'
miRNA:   3'- gaCCgGGGGgUCCUGGAGGa-CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 7404 0.83 0.032135
Target:  5'- -cGGCCCCUC-GGACCUCaagGGCCCCa -3'
miRNA:   3'- gaCCGGGGGGuCCUGGAGga-CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 41057 0.81 0.044876
Target:  5'- gCUGGCCCCaCAGGACCaUCC-GGCCCg -3'
miRNA:   3'- -GACCGGGGgGUCCUGG-AGGaCCGGGg -5'
30654 5' -66.1 NC_006549.1 + 40620 0.8 0.053661
Target:  5'- -cGGCCCCaCAGGGCCUCCcggaccgcaaGGCCCCc -3'
miRNA:   3'- gaCCGGGGgGUCCUGGAGGa---------CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 50483 0.78 0.067436
Target:  5'- uCUGGCCCCgCGGGGCCaacgaggCCaaugggacccacUGGCCCCg -3'
miRNA:   3'- -GACCGGGGgGUCCUGGa------GG------------ACCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 41701 0.78 0.072744
Target:  5'- -cGGCCCCCCcGGcCCcCCUGGgCCCg -3'
miRNA:   3'- gaCCGGGGGGuCCuGGaGGACCgGGG- -5'
30654 5' -66.1 NC_006549.1 + 7378 0.78 0.074601
Target:  5'- -gGGCCCgCCC-GGcCCUCCagGGCCCCa -3'
miRNA:   3'- gaCCGGG-GGGuCCuGGAGGa-CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 41581 0.77 0.076503
Target:  5'- -cGGUCCCCaAGGACUUCCcGGCCUCa -3'
miRNA:   3'- gaCCGGGGGgUCCUGGAGGaCCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 41001 0.76 0.098253
Target:  5'- -aGGCCCCCaGGGAUC-CCUgggGGCCCCc -3'
miRNA:   3'- gaCCGGGGGgUCCUGGaGGA---CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 51000 0.74 0.125752
Target:  5'- -gGGCCCCUUAGGGCCgaucGGCCCUa -3'
miRNA:   3'- gaCCGGGGGGUCCUGGaggaCCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 102595 0.73 0.164121
Target:  5'- -gGGUgCCCgggAGGACCUCUcgGGCCCCu -3'
miRNA:   3'- gaCCGgGGGg--UCCUGGAGGa-CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 123004 0.72 0.180511
Target:  5'- uCUGGCCCgCCucuucGGCCUUCUGGCCagCCu -3'
miRNA:   3'- -GACCGGGgGGuc---CUGGAGGACCGG--GG- -5'
30654 5' -66.1 NC_006549.1 + 122773 0.72 0.180511
Target:  5'- uCUGGCCCgCCucuucGGCCUUCUGGCCagCCu -3'
miRNA:   3'- -GACCGGGgGGuc---CUGGAGGACCGG--GG- -5'
30654 5' -66.1 NC_006549.1 + 122689 0.72 0.180511
Target:  5'- uCUGGCCCgCCucuucGGCCUUCUGGCCagCCu -3'
miRNA:   3'- -GACCGGGgGGuc---CUGGAGGACCGG--GG- -5'
30654 5' -66.1 NC_006549.1 + 40956 0.72 0.184829
Target:  5'- -aGGCUCCCCuGGG-CUCacgGGCCCCc -3'
miRNA:   3'- gaCCGGGGGGuCCUgGAGga-CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 102030 0.72 0.200199
Target:  5'- -gGGUCCCgauucuccaucgcguCCGGGugCUCCUcugGGCCCUg -3'
miRNA:   3'- gaCCGGGG---------------GGUCCugGAGGA---CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 41279 0.71 0.203025
Target:  5'- -aGGCCCUCaAGGACUUCCcGGaCCCg -3'
miRNA:   3'- gaCCGGGGGgUCCUGGAGGaCCgGGG- -5'
30654 5' -66.1 NC_006549.1 + 41148 0.71 0.219695
Target:  5'- -gGGUCCCaCGGGACCUaggggcccgagaggaCCUaucGGCCCCg -3'
miRNA:   3'- gaCCGGGGgGUCCUGGA---------------GGA---CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 7002 0.71 0.227936
Target:  5'- -cGGCgCUCCGGGACCUCaagGaGCuCCCg -3'
miRNA:   3'- gaCCGgGGGGUCCUGGAGga-C-CG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.