miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30683 5' -54.9 NC_006552.1 + 56862 0.73 0.371568
Target:  5'- cGcGCaGCUCAGCAUCgGUCCAgACGaUGCCu -3'
miRNA:   3'- aC-CG-CGAGUUGUAG-CAGGU-UGC-GCGG- -5'
30683 5' -54.9 NC_006552.1 + 2126 0.74 0.338115
Target:  5'- aGGUGCUgGGCAUgG-CCAACGCcgucGCCg -3'
miRNA:   3'- aCCGCGAgUUGUAgCaGGUUGCG----CGG- -5'
30683 5' -54.9 NC_006552.1 + 6132 0.76 0.257693
Target:  5'- cUGGCGCUCugcGCGUCGcugcguUCCuGAUGCGCUa -3'
miRNA:   3'- -ACCGCGAGu--UGUAGC------AGG-UUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 52273 0.76 0.257693
Target:  5'- gUGGUGUUCGccACAagcUCGgCCAGCGCGCUg -3'
miRNA:   3'- -ACCGCGAGU--UGU---AGCaGGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 14889 0.77 0.238659
Target:  5'- gGGCGCUCAccgaaguuGCGUCGgcaaUCGGCGUGCUg -3'
miRNA:   3'- aCCGCGAGU--------UGUAGCa---GGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 23805 0.72 0.454641
Target:  5'- aGGCGCcacUCAGgGUCaG-CCAggcaGCGCGCCa -3'
miRNA:   3'- aCCGCG---AGUUgUAG-CaGGU----UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 47241 0.71 0.474436
Target:  5'- aGGCGCgccgaguuacCGGCGUUGUacugagCCAACGCGUCc -3'
miRNA:   3'- aCCGCGa---------GUUGUAGCA------GGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 56778 0.69 0.600518
Target:  5'- cGGgGCUCAgGCcgCG-CCAgGCGCGCa -3'
miRNA:   3'- aCCgCGAGU-UGuaGCaGGU-UGCGCGg -5'
30683 5' -54.9 NC_006552.1 + 38654 0.69 0.589684
Target:  5'- gGGUGUcCAGCGUCaGgcgcucggCCuGCGCGCCa -3'
miRNA:   3'- aCCGCGaGUUGUAG-Ca-------GGuUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 33070 0.69 0.578884
Target:  5'- aUGGCGUaCAGCGgcUUG-CCGgugcauGCGCGCCa -3'
miRNA:   3'- -ACCGCGaGUUGU--AGCaGGU------UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 33520 0.7 0.557423
Target:  5'- cGGUGC-CuuCGUCGgCCGagaucugcagGCGCGCCa -3'
miRNA:   3'- aCCGCGaGuuGUAGCaGGU----------UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 34195 0.7 0.557423
Target:  5'- ---gGCUCGGCGUCaGUUCAAUGgGCCu -3'
miRNA:   3'- accgCGAGUUGUAG-CAGGUUGCgCGG- -5'
30683 5' -54.9 NC_006552.1 + 63144 0.7 0.557423
Target:  5'- aGGCGCUUgAGCGcgccggCGUCguGCGCgGCCu -3'
miRNA:   3'- aCCGCGAG-UUGUa-----GCAGguUGCG-CGG- -5'
30683 5' -54.9 NC_006552.1 + 44178 0.7 0.546776
Target:  5'- cGGCGCgUCGgguAgGUCGUCCAuguCGC-CCa -3'
miRNA:   3'- aCCGCG-AGU---UgUAGCAGGUu--GCGcGG- -5'
30683 5' -54.9 NC_006552.1 + 46970 0.7 0.540418
Target:  5'- cGGCGCUUGGCAuagcaguuccaguauUCGccgccgacUCCAGCGCuCCg -3'
miRNA:   3'- aCCGCGAGUUGU---------------AGC--------AGGUUGCGcGG- -5'
30683 5' -54.9 NC_006552.1 + 53301 0.7 0.53514
Target:  5'- aGGCGCgcggccaauuUCuuCAggcCGUCCAcguccgccaucugGCGCGCCa -3'
miRNA:   3'- aCCGCG----------AGuuGUa--GCAGGU-------------UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 30836 0.7 0.525685
Target:  5'- gGGUGCU--GCuuggCGUUCGACGCGCg -3'
miRNA:   3'- aCCGCGAguUGua--GCAGGUUGCGCGg -5'
30683 5' -54.9 NC_006552.1 + 31794 0.7 0.525685
Target:  5'- cGGCGCUUAGacugCG-CCGAgGCGCUc -3'
miRNA:   3'- aCCGCGAGUUgua-GCaGGUUgCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 64438 0.7 0.525685
Target:  5'- cGGCGCUCGAUggC-UCCGAcaacCGCaGCCa -3'
miRNA:   3'- aCCGCGAGUUGuaGcAGGUU----GCG-CGG- -5'
30683 5' -54.9 NC_006552.1 + 20601 0.71 0.484494
Target:  5'- aGGCGCUCGuagGCGgcaaugaaCG-CCAugcGCGCGCCc -3'
miRNA:   3'- aCCGCGAGU---UGUa-------GCaGGU---UGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.