miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30683 5' -54.9 NC_006552.1 + 38654 0.69 0.589684
Target:  5'- gGGUGUcCAGCGUCaGgcgcucggCCuGCGCGCCa -3'
miRNA:   3'- aCCGCGaGUUGUAG-Ca-------GGuUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 38844 0.67 0.722523
Target:  5'- aGGCGCgcgccggUCAcacuggcauccaagcACAgCGgaaaggugacuUCCAGCGCGCCg -3'
miRNA:   3'- aCCGCG-------AGU---------------UGUaGC-----------AGGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 39030 0.67 0.750593
Target:  5'- uUGGCGCgcgcgaUCAGCAgaCG-CC--CGCGCCa -3'
miRNA:   3'- -ACCGCG------AGUUGUa-GCaGGuuGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 42040 0.72 0.444912
Target:  5'- -cGCGCUCgAACAcCGgcaCCAGCGcCGCCa -3'
miRNA:   3'- acCGCGAG-UUGUaGCa--GGUUGC-GCGG- -5'
30683 5' -54.9 NC_006552.1 + 42916 0.66 0.764824
Target:  5'- cGGuCGCUCGccGCAUCGcugaugguugccugaUCCAccaGCagguGCGCCg -3'
miRNA:   3'- aCC-GCGAGU--UGUAGC---------------AGGU---UG----CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 43607 0.72 0.425811
Target:  5'- aGGCGCUauGCGgaugcaCCAGCGCGCCc -3'
miRNA:   3'- aCCGCGAguUGUagca--GGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 44178 0.7 0.546776
Target:  5'- cGGCGCgUCGgguAgGUCGUCCAuguCGC-CCa -3'
miRNA:   3'- aCCGCG-AGU---UgUAGCAGGUu--GCGcGG- -5'
30683 5' -54.9 NC_006552.1 + 45118 0.68 0.676584
Target:  5'- aGGCGUcgAACugguucuugAUCGUCuCGGCGCGCa -3'
miRNA:   3'- aCCGCGagUUG---------UAGCAG-GUUGCGCGg -5'
30683 5' -54.9 NC_006552.1 + 45471 0.68 0.687367
Target:  5'- cGGCGUcggCcACGUUGgcgcuggCCGcuGCGCGCCa -3'
miRNA:   3'- aCCGCGa--GuUGUAGCa------GGU--UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 46431 0.67 0.750593
Target:  5'- aUGGCcuguuGCUgCcguGCcgCGUCCgAACGUGCCu -3'
miRNA:   3'- -ACCG-----CGA-Gu--UGuaGCAGG-UUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 46970 0.7 0.540418
Target:  5'- cGGCGCUUGGCAuagcaguuccaguauUCGccgccgacUCCAGCGCuCCg -3'
miRNA:   3'- aCCGCGAGUUGU---------------AGC--------AGGUUGCGcGG- -5'
30683 5' -54.9 NC_006552.1 + 47143 0.69 0.633144
Target:  5'- aGGCGUUCGggccaGCAgguUC-UCCAcuGCGCGCUg -3'
miRNA:   3'- aCCGCGAGU-----UGU---AGcAGGU--UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 47241 0.71 0.474436
Target:  5'- aGGCGCgccgaguuacCGGCGUUGUacugagCCAACGCGUCc -3'
miRNA:   3'- aCCGCGa---------GUUGUAGCA------GGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 47544 0.67 0.698098
Target:  5'- cUGGCGaUCGAguUCGUUgGcggcgaggaagcGCGCGCCc -3'
miRNA:   3'- -ACCGCgAGUUguAGCAGgU------------UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 48387 0.67 0.729871
Target:  5'- aGGUGC-CAACGcUGgagCCAGCGC-CCg -3'
miRNA:   3'- aCCGCGaGUUGUaGCa--GGUUGCGcGG- -5'
30683 5' -54.9 NC_006552.1 + 49671 0.72 0.435301
Target:  5'- gGGCcuGCUgGAUGUCGUCCuGCaCGCCg -3'
miRNA:   3'- aCCG--CGAgUUGUAGCAGGuUGcGCGG- -5'
30683 5' -54.9 NC_006552.1 + 49730 0.67 0.740286
Target:  5'- cGGCGC-CAGCgauacagccgGUUGUgCGGCuuGCGCCu -3'
miRNA:   3'- aCCGCGaGUUG----------UAGCAgGUUG--CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 50066 0.66 0.780765
Target:  5'- cUGGCGCgCGuugaacuCGUCG-CCGcgcaaGCGCGCUu -3'
miRNA:   3'- -ACCGCGaGUu------GUAGCaGGU-----UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 50484 0.68 0.687367
Target:  5'- cGaGCGCUCAGgaaGUUcaCCAuCGCGCCg -3'
miRNA:   3'- aC-CGCGAGUUg--UAGcaGGUuGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 51289 0.68 0.687367
Target:  5'- cGGCcgccuGCUgAGCAUCGgu--GCGUGCCa -3'
miRNA:   3'- aCCG-----CGAgUUGUAGCagguUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.