miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30683 5' -54.9 NC_006552.1 + 23805 0.72 0.454641
Target:  5'- aGGCGCcacUCAGgGUCaG-CCAggcaGCGCGCCa -3'
miRNA:   3'- aCCGCG---AGUUgUAG-CaGGU----UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 23998 0.72 0.435301
Target:  5'- -cGCGaUCAGCGUCGUaaagccgagCUGACGCGCCu -3'
miRNA:   3'- acCGCgAGUUGUAGCA---------GGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 24643 0.67 0.740286
Target:  5'- cGGCGC-CGGagaaGUCCG-CGCGCUu -3'
miRNA:   3'- aCCGCGaGUUguagCAGGUuGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 25716 0.67 0.719361
Target:  5'- cUGGCGUUCuGCcgUGUUCAGCcgguaguucagaGCGUCg -3'
miRNA:   3'- -ACCGCGAGuUGuaGCAGGUUG------------CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 26613 0.66 0.760783
Target:  5'- -cGCGCUUcACAUCGa--AGCGCGCa -3'
miRNA:   3'- acCGCGAGuUGUAGCaggUUGCGCGg -5'
30683 5' -54.9 NC_006552.1 + 29028 0.73 0.38912
Target:  5'- cGGCGCUggccucgcCAGCAUCG-CCGGCacccGCGUCg -3'
miRNA:   3'- aCCGCGA--------GUUGUAGCaGGUUG----CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 29094 0.68 0.66576
Target:  5'- cGGCG-UCAcCcgCGcCCugcuGCGCGCCa -3'
miRNA:   3'- aCCGCgAGUuGuaGCaGGu---UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 29912 0.69 0.633144
Target:  5'- cGGgGCUCAugccgcGCAgggCGUCCGACauggaUGCCg -3'
miRNA:   3'- aCCgCGAGU------UGUa--GCAGGUUGc----GCGG- -5'
30683 5' -54.9 NC_006552.1 + 30836 0.7 0.525685
Target:  5'- gGGUGCU--GCuuggCGUUCGACGCGCg -3'
miRNA:   3'- aCCGCGAguUGua--GCAGGUUGCGCGg -5'
30683 5' -54.9 NC_006552.1 + 30967 0.73 0.38912
Target:  5'- cGGCGCUCGAC-UCGgcuUCCGaguuguACGCGgCg -3'
miRNA:   3'- aCCGCGAGUUGuAGC---AGGU------UGCGCgG- -5'
30683 5' -54.9 NC_006552.1 + 31609 0.67 0.719361
Target:  5'- cGGCGUccugcggauaggUC-GCGUCGUCC-ACGcCGUCg -3'
miRNA:   3'- aCCGCG------------AGuUGUAGCAGGuUGC-GCGG- -5'
30683 5' -54.9 NC_006552.1 + 31652 0.66 0.760783
Target:  5'- aGGCGCgCAGCGg---CCGACagcagcaggccaGCGCCg -3'
miRNA:   3'- aCCGCGaGUUGUagcaGGUUG------------CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 31794 0.7 0.525685
Target:  5'- cGGCGCUUAGacugCG-CCGAgGCGCUc -3'
miRNA:   3'- aCCGCGAGUUgua-GCaGGUUgCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 32472 0.67 0.713013
Target:  5'- gGaGCGCUCGAacagGUCGcgaugguugaggaaUCGACGCGCCa -3'
miRNA:   3'- aC-CGCGAGUUg---UAGCa-------------GGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 33070 0.69 0.578884
Target:  5'- aUGGCGUaCAGCGgcUUG-CCGgugcauGCGCGCCa -3'
miRNA:   3'- -ACCGCGaGUUGU--AGCaGGU------UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 33212 0.72 0.425811
Target:  5'- gUGGUGCUCGGCGugaaUC-UCCGGCuGCGCg -3'
miRNA:   3'- -ACCGCGAGUUGU----AGcAGGUUG-CGCGg -5'
30683 5' -54.9 NC_006552.1 + 33330 0.66 0.786646
Target:  5'- gGGCGCUCGccgaaguaaGCcgugaaagcggcuUCGgCCAGCGCGgCg -3'
miRNA:   3'- aCCGCGAGU---------UGu------------AGCaGGUUGCGCgG- -5'
30683 5' -54.9 NC_006552.1 + 33520 0.7 0.557423
Target:  5'- cGGUGC-CuuCGUCGgCCGagaucugcagGCGCGCCa -3'
miRNA:   3'- aCCGCGaGuuGUAGCaGGU----------UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 34195 0.7 0.557423
Target:  5'- ---gGCUCGGCGUCaGUUCAAUGgGCCu -3'
miRNA:   3'- accgCGAGUUGUAG-CAGGUUGCgCGG- -5'
30683 5' -54.9 NC_006552.1 + 34526 0.68 0.66576
Target:  5'- aGGCGgUguaGAUGUCGUCgAGCGaUGCCg -3'
miRNA:   3'- aCCGCgAg--UUGUAGCAGgUUGC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.