Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 51289 | 0.68 | 0.687367 |
Target: 5'- cGGCcgccuGCUgAGCAUCGgu--GCGUGCCa -3' miRNA: 3'- aCCG-----CGAgUUGUAGCagguUGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 50484 | 0.68 | 0.687367 |
Target: 5'- cGaGCGCUCAGgaaGUUcaCCAuCGCGCCg -3' miRNA: 3'- aC-CGCGAGUUg--UAGcaGGUuGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 50066 | 0.66 | 0.780765 |
Target: 5'- cUGGCGCgCGuugaacuCGUCG-CCGcgcaaGCGCGCUu -3' miRNA: 3'- -ACCGCGaGUu------GUAGCaGGU-----UGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 49730 | 0.67 | 0.740286 |
Target: 5'- cGGCGC-CAGCgauacagccgGUUGUgCGGCuuGCGCCu -3' miRNA: 3'- aCCGCGaGUUG----------UAGCAgGUUG--CGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 49671 | 0.72 | 0.435301 |
Target: 5'- gGGCcuGCUgGAUGUCGUCCuGCaCGCCg -3' miRNA: 3'- aCCG--CGAgUUGUAGCAGGuUGcGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 48387 | 0.67 | 0.729871 |
Target: 5'- aGGUGC-CAACGcUGgagCCAGCGC-CCg -3' miRNA: 3'- aCCGCGaGUUGUaGCa--GGUUGCGcGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 47544 | 0.67 | 0.698098 |
Target: 5'- cUGGCGaUCGAguUCGUUgGcggcgaggaagcGCGCGCCc -3' miRNA: 3'- -ACCGCgAGUUguAGCAGgU------------UGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 47241 | 0.71 | 0.474436 |
Target: 5'- aGGCGCgccgaguuacCGGCGUUGUacugagCCAACGCGUCc -3' miRNA: 3'- aCCGCGa---------GUUGUAGCA------GGUUGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 47143 | 0.69 | 0.633144 |
Target: 5'- aGGCGUUCGggccaGCAgguUC-UCCAcuGCGCGCUg -3' miRNA: 3'- aCCGCGAGU-----UGU---AGcAGGU--UGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 46970 | 0.7 | 0.540418 |
Target: 5'- cGGCGCUUGGCAuagcaguuccaguauUCGccgccgacUCCAGCGCuCCg -3' miRNA: 3'- aCCGCGAGUUGU---------------AGC--------AGGUUGCGcGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 46431 | 0.67 | 0.750593 |
Target: 5'- aUGGCcuguuGCUgCcguGCcgCGUCCgAACGUGCCu -3' miRNA: 3'- -ACCG-----CGA-Gu--UGuaGCAGG-UUGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 45471 | 0.68 | 0.687367 |
Target: 5'- cGGCGUcggCcACGUUGgcgcuggCCGcuGCGCGCCa -3' miRNA: 3'- aCCGCGa--GuUGUAGCa------GGU--UGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 45118 | 0.68 | 0.676584 |
Target: 5'- aGGCGUcgAACugguucuugAUCGUCuCGGCGCGCa -3' miRNA: 3'- aCCGCGagUUG---------UAGCAG-GUUGCGCGg -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 44178 | 0.7 | 0.546776 |
Target: 5'- cGGCGCgUCGgguAgGUCGUCCAuguCGC-CCa -3' miRNA: 3'- aCCGCG-AGU---UgUAGCAGGUu--GCGcGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 43607 | 0.72 | 0.425811 |
Target: 5'- aGGCGCUauGCGgaugcaCCAGCGCGCCc -3' miRNA: 3'- aCCGCGAguUGUagca--GGUUGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 42916 | 0.66 | 0.764824 |
Target: 5'- cGGuCGCUCGccGCAUCGcugaugguugccugaUCCAccaGCagguGCGCCg -3' miRNA: 3'- aCC-GCGAGU--UGUAGC---------------AGGU---UG----CGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 42040 | 0.72 | 0.444912 |
Target: 5'- -cGCGCUCgAACAcCGgcaCCAGCGcCGCCa -3' miRNA: 3'- acCGCGAG-UUGUaGCa--GGUUGC-GCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 39030 | 0.67 | 0.750593 |
Target: 5'- uUGGCGCgcgcgaUCAGCAgaCG-CC--CGCGCCa -3' miRNA: 3'- -ACCGCG------AGUUGUa-GCaGGuuGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 38844 | 0.67 | 0.722523 |
Target: 5'- aGGCGCgcgccggUCAcacuggcauccaagcACAgCGgaaaggugacuUCCAGCGCGCCg -3' miRNA: 3'- aCCGCG-------AGU---------------UGUaGC-----------AGGUUGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 38654 | 0.69 | 0.589684 |
Target: 5'- gGGUGUcCAGCGUCaGgcgcucggCCuGCGCGCCa -3' miRNA: 3'- aCCGCGaGUUGUAG-Ca-------GGuUGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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