miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30683 5' -54.9 NC_006552.1 + 64438 0.7 0.525685
Target:  5'- cGGCGCUCGAUggC-UCCGAcaacCGCaGCCa -3'
miRNA:   3'- aCCGCGAGUUGuaGcAGGUU----GCG-CGG- -5'
30683 5' -54.9 NC_006552.1 + 64325 0.66 0.779779
Target:  5'- -uGCGCUgccuuucCGGCuAUCGUCCGcccaGCGCCc -3'
miRNA:   3'- acCGCGA-------GUUG-UAGCAGGUug--CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 63144 0.7 0.557423
Target:  5'- aGGCGCUUgAGCGcgccggCGUCguGCGCgGCCu -3'
miRNA:   3'- aCCGCGAG-UUGUa-----GCAGguUGCG-CGG- -5'
30683 5' -54.9 NC_006552.1 + 62495 0.66 0.770844
Target:  5'- gUGGCGCauggacgcuucuUCAGCGcagcUUGgcgCCAucGCGCGCUu -3'
miRNA:   3'- -ACCGCG------------AGUUGU----AGCa--GGU--UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 62066 0.67 0.750593
Target:  5'- -aGCGCUCcGCuUCGUaagCGGCGaCGCCu -3'
miRNA:   3'- acCGCGAGuUGuAGCAg--GUUGC-GCGG- -5'
30683 5' -54.9 NC_006552.1 + 60772 0.67 0.740286
Target:  5'- cGGUGC-CAcCAcCaUCCGGCGUGCCc -3'
miRNA:   3'- aCCGCGaGUuGUaGcAGGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 59553 0.68 0.66576
Target:  5'- cGGCuGUUCGACAUCG--CAACGCcCCc -3'
miRNA:   3'- aCCG-CGAGUUGUAGCagGUUGCGcGG- -5'
30683 5' -54.9 NC_006552.1 + 57022 0.69 0.611379
Target:  5'- -uGCGCaUCGGCcgCGUCCAucaccugguCGCGCa -3'
miRNA:   3'- acCGCG-AGUUGuaGCAGGUu--------GCGCGg -5'
30683 5' -54.9 NC_006552.1 + 56916 0.67 0.750593
Target:  5'- cGGCGCggAACucgCGguaCAGCGCGaCCu -3'
miRNA:   3'- aCCGCGagUUGua-GCag-GUUGCGC-GG- -5'
30683 5' -54.9 NC_006552.1 + 56862 0.73 0.371568
Target:  5'- cGcGCaGCUCAGCAUCgGUCCAgACGaUGCCu -3'
miRNA:   3'- aC-CG-CGAGUUGUAG-CAGGU-UGC-GCGG- -5'
30683 5' -54.9 NC_006552.1 + 56778 0.69 0.600518
Target:  5'- cGGgGCUCAgGCcgCG-CCAgGCGCGCa -3'
miRNA:   3'- aCCgCGAGU-UGuaGCaGGU-UGCGCGg -5'
30683 5' -54.9 NC_006552.1 + 56684 0.69 0.622257
Target:  5'- gGcGCGCUCAGCcagCGaaUCGACGCGCa -3'
miRNA:   3'- aC-CGCGAGUUGua-GCa-GGUUGCGCGg -5'
30683 5' -54.9 NC_006552.1 + 55466 0.68 0.676584
Target:  5'- cUGGCGCgauuCAUCag-CAugGCGCCg -3'
miRNA:   3'- -ACCGCGaguuGUAGcagGUugCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 54467 0.66 0.760783
Target:  5'- cGGC-CUCGGCGuuuUCGcCCAuggcgAUGCGCUg -3'
miRNA:   3'- aCCGcGAGUUGU---AGCaGGU-----UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 54408 0.69 0.611379
Target:  5'- uUGGCGC-CGACGgcauugCGUCCGGCGaacgaGUa -3'
miRNA:   3'- -ACCGCGaGUUGUa-----GCAGGUUGCg----CGg -5'
30683 5' -54.9 NC_006552.1 + 53673 0.66 0.800144
Target:  5'- aGGCGCUUGcGCuuuUCGugcgcgcucUCCAGCGC-CCa -3'
miRNA:   3'- aCCGCGAGU-UGu--AGC---------AGGUUGCGcGG- -5'
30683 5' -54.9 NC_006552.1 + 53301 0.7 0.53514
Target:  5'- aGGCGCgcggccaauuUCuuCAggcCGUCCAcguccgccaucugGCGCGCCa -3'
miRNA:   3'- aCCGCG----------AGuuGUa--GCAGGU-------------UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 52825 0.66 0.760783
Target:  5'- cGGCGCgcuUCuGCAaCGgCCuGCGCGUCg -3'
miRNA:   3'- aCCGCG---AGuUGUaGCaGGuUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 52273 0.76 0.257693
Target:  5'- gUGGUGUUCGccACAagcUCGgCCAGCGCGCUg -3'
miRNA:   3'- -ACCGCGAGU--UGU---AGCaGGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 51367 0.66 0.800144
Target:  5'- aGGUGC-CGGCGcgcaCGUUCAucAgGCGCCg -3'
miRNA:   3'- aCCGCGaGUUGUa---GCAGGU--UgCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.