miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30683 5' -54.9 NC_006552.1 + 53301 0.7 0.53514
Target:  5'- aGGCGCgcggccaauuUCuuCAggcCGUCCAcguccgccaucugGCGCGCCa -3'
miRNA:   3'- aCCGCG----------AGuuGUa--GCAGGU-------------UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 46970 0.7 0.540418
Target:  5'- cGGCGCUUGGCAuagcaguuccaguauUCGccgccgacUCCAGCGCuCCg -3'
miRNA:   3'- aCCGCGAGUUGU---------------AGC--------AGGUUGCGcGG- -5'
30683 5' -54.9 NC_006552.1 + 44178 0.7 0.546776
Target:  5'- cGGCGCgUCGgguAgGUCGUCCAuguCGC-CCa -3'
miRNA:   3'- aCCGCG-AGU---UgUAGCAGGUu--GCGcGG- -5'
30683 5' -54.9 NC_006552.1 + 63144 0.7 0.557423
Target:  5'- aGGCGCUUgAGCGcgccggCGUCguGCGCgGCCu -3'
miRNA:   3'- aCCGCGAG-UUGUa-----GCAGguUGCG-CGG- -5'
30683 5' -54.9 NC_006552.1 + 34195 0.7 0.557423
Target:  5'- ---gGCUCGGCGUCaGUUCAAUGgGCCu -3'
miRNA:   3'- accgCGAGUUGUAG-CAGGUUGCgCGG- -5'
30683 5' -54.9 NC_006552.1 + 33520 0.7 0.557423
Target:  5'- cGGUGC-CuuCGUCGgCCGagaucugcagGCGCGCCa -3'
miRNA:   3'- aCCGCGaGuuGUAGCaGGU----------UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 33070 0.69 0.578884
Target:  5'- aUGGCGUaCAGCGgcUUG-CCGgugcauGCGCGCCa -3'
miRNA:   3'- -ACCGCGaGUUGU--AGCaGGU------UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 38654 0.69 0.589684
Target:  5'- gGGUGUcCAGCGUCaGgcgcucggCCuGCGCGCCa -3'
miRNA:   3'- aCCGCGaGUUGUAG-Ca-------GGuUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 56778 0.69 0.600518
Target:  5'- cGGgGCUCAgGCcgCG-CCAgGCGCGCa -3'
miRNA:   3'- aCCgCGAGU-UGuaGCaGGU-UGCGCGg -5'
30683 5' -54.9 NC_006552.1 + 4636 0.69 0.600518
Target:  5'- cGGCGaCUCGccGCAggcaUGUCCcucgagGACGCGCUg -3'
miRNA:   3'- aCCGC-GAGU--UGUa---GCAGG------UUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 57022 0.69 0.611379
Target:  5'- -uGCGCaUCGGCcgCGUCCAucaccugguCGCGCa -3'
miRNA:   3'- acCGCG-AGUUGuaGCAGGUu--------GCGCGg -5'
30683 5' -54.9 NC_006552.1 + 54408 0.69 0.611379
Target:  5'- uUGGCGC-CGACGgcauugCGUCCGGCGaacgaGUa -3'
miRNA:   3'- -ACCGCGaGUUGUa-----GCAGGUUGCg----CGg -5'
30683 5' -54.9 NC_006552.1 + 11076 0.69 0.611379
Target:  5'- aGGCuCUgGcGCAUCGUCUGA-GCGCCg -3'
miRNA:   3'- aCCGcGAgU-UGUAGCAGGUUgCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 56684 0.69 0.622257
Target:  5'- gGcGCGCUCAGCcagCGaaUCGACGCGCa -3'
miRNA:   3'- aC-CGCGAGUUGua-GCa-GGUUGCGCGg -5'
30683 5' -54.9 NC_006552.1 + 47143 0.69 0.633144
Target:  5'- aGGCGUUCGggccaGCAgguUC-UCCAcuGCGCGCUg -3'
miRNA:   3'- aCCGCGAGU-----UGU---AGcAGGU--UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 29912 0.69 0.633144
Target:  5'- cGGgGCUCAugccgcGCAgggCGUCCGACauggaUGCCg -3'
miRNA:   3'- aCCgCGAGU------UGUa--GCAGGUUGc----GCGG- -5'
30683 5' -54.9 NC_006552.1 + 8308 0.68 0.654905
Target:  5'- gGGUuccGCUCAACGUCGg-CGAggagugguacCGCGCCc -3'
miRNA:   3'- aCCG---CGAGUUGUAGCagGUU----------GCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 59553 0.68 0.66576
Target:  5'- cGGCuGUUCGACAUCG--CAACGCcCCc -3'
miRNA:   3'- aCCG-CGAGUUGUAGCagGUUGCGcGG- -5'
30683 5' -54.9 NC_006552.1 + 34526 0.68 0.66576
Target:  5'- aGGCGgUguaGAUGUCGUCgAGCGaUGCCg -3'
miRNA:   3'- aCCGCgAg--UUGUAGCAGgUUGC-GCGG- -5'
30683 5' -54.9 NC_006552.1 + 29094 0.68 0.66576
Target:  5'- cGGCG-UCAcCcgCGcCCugcuGCGCGCCa -3'
miRNA:   3'- aCCGCgAGUuGuaGCaGGu---UGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.