miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30683 5' -54.9 NC_006552.1 + 13055 0.67 0.750593
Target:  5'- gUGGCGCgcccGCGUCGUUgAuaaaacCGCGCUc -3'
miRNA:   3'- -ACCGCGagu-UGUAGCAGgUu-----GCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 39030 0.67 0.750593
Target:  5'- uUGGCGCgcgcgaUCAGCAgaCG-CC--CGCGCCa -3'
miRNA:   3'- -ACCGCG------AGUUGUa-GCaGGuuGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 579 0.67 0.719361
Target:  5'- cUGGUGCUcCAGCAccaCGguacggCCGACGCuguucGCCg -3'
miRNA:   3'- -ACCGCGA-GUUGUa--GCa-----GGUUGCG-----CGG- -5'
30683 5' -54.9 NC_006552.1 + 47544 0.67 0.698098
Target:  5'- cUGGCGaUCGAguUCGUUgGcggcgaggaagcGCGCGCCc -3'
miRNA:   3'- -ACCGCgAGUUguAGCAGgU------------UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 21014 0.67 0.708766
Target:  5'- cGGCGCgcCGACG--GUCCAugucuuCGCGCUc -3'
miRNA:   3'- aCCGCGa-GUUGUagCAGGUu-----GCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 25716 0.67 0.719361
Target:  5'- cUGGCGUUCuGCcgUGUUCAGCcgguaguucagaGCGUCg -3'
miRNA:   3'- -ACCGCGAGuUGuaGCAGGUUG------------CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 31609 0.67 0.719361
Target:  5'- cGGCGUccugcggauaggUC-GCGUCGUCC-ACGcCGUCg -3'
miRNA:   3'- aCCGCG------------AGuUGUAGCAGGuUGC-GCGG- -5'
30683 5' -54.9 NC_006552.1 + 38844 0.67 0.722523
Target:  5'- aGGCGCgcgccggUCAcacuggcauccaagcACAgCGgaaaggugacuUCCAGCGCGCCg -3'
miRNA:   3'- aCCGCG-------AGU---------------UGUaGC-----------AGGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 48387 0.67 0.729871
Target:  5'- aGGUGC-CAACGcUGgagCCAGCGC-CCg -3'
miRNA:   3'- aCCGCGaGUUGUaGCa--GGUUGCGcGG- -5'
30683 5' -54.9 NC_006552.1 + 49730 0.67 0.740286
Target:  5'- cGGCGC-CAGCgauacagccgGUUGUgCGGCuuGCGCCu -3'
miRNA:   3'- aCCGCGaGUUG----------UAGCAgGUUG--CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 5796 0.67 0.740286
Target:  5'- gGGCGCggCAGCGUCaggCgGugGCGgCg -3'
miRNA:   3'- aCCGCGa-GUUGUAGca-GgUugCGCgG- -5'
30683 5' -54.9 NC_006552.1 + 24643 0.67 0.740286
Target:  5'- cGGCGC-CGGagaaGUCCG-CGCGCUu -3'
miRNA:   3'- aCCGCGaGUUguagCAGGUuGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 8920 0.67 0.740286
Target:  5'- cGGCGUcCGcCAguUCGccaUCCAGCaGCGCCu -3'
miRNA:   3'- aCCGCGaGUuGU--AGC---AGGUUG-CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 62066 0.67 0.750593
Target:  5'- -aGCGCUCcGCuUCGUaagCGGCGaCGCCu -3'
miRNA:   3'- acCGCGAGuUGuAGCAg--GUUGC-GCGG- -5'
30683 5' -54.9 NC_006552.1 + 29094 0.68 0.66576
Target:  5'- cGGCG-UCAcCcgCGcCCugcuGCGCGCCa -3'
miRNA:   3'- aCCGCgAGUuGuaGCaGGu---UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 34526 0.68 0.66576
Target:  5'- aGGCGgUguaGAUGUCGUCgAGCGaUGCCg -3'
miRNA:   3'- aCCGCgAg--UUGUAGCAGgUUGC-GCGG- -5'
30683 5' -54.9 NC_006552.1 + 59553 0.68 0.66576
Target:  5'- cGGCuGUUCGACAUCG--CAACGCcCCc -3'
miRNA:   3'- aCCG-CGAGUUGUAGCagGUUGCGcGG- -5'
30683 5' -54.9 NC_006552.1 + 8308 0.68 0.654905
Target:  5'- gGGUuccGCUCAACGUCGg-CGAggagugguacCGCGCCc -3'
miRNA:   3'- aCCG---CGAGUUGUAGCagGUU----------GCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 3846 0.68 0.687367
Target:  5'- aGGacaGCcgcagCAACGUCGggagCCGggccauguuuugGCGCGCCg -3'
miRNA:   3'- aCCg--CGa----GUUGUAGCa---GGU------------UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 51289 0.68 0.687367
Target:  5'- cGGCcgccuGCUgAGCAUCGgu--GCGUGCCa -3'
miRNA:   3'- aCCG-----CGAgUUGUAGCagguUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.