miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30684 5' -62.1 NC_006552.1 + 33094 0.79 0.05304
Target:  5'- aGGCGCAGCgaaGUGUCGCCCUGGaugGCg -3'
miRNA:   3'- gUUGCGUCGag-CGCGGCGGGACCg--CG- -5'
30684 5' -62.1 NC_006552.1 + 32893 0.68 0.313398
Target:  5'- uCGAUGCGGCacacgGCGUCGgCCUGGCu- -3'
miRNA:   3'- -GUUGCGUCGag---CGCGGCgGGACCGcg -5'
30684 5' -62.1 NC_006552.1 + 31803 0.66 0.401841
Target:  5'- gUAGgGCGGCg-GCGCuuagacugCGCCgaGGCGCu -3'
miRNA:   3'- -GUUgCGUCGagCGCG--------GCGGgaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 31613 0.67 0.341418
Target:  5'- -uACGCGGCguccugcggauaggUCGCGUCGUCCacgccgucGGCGUa -3'
miRNA:   3'- guUGCGUCG--------------AGCGCGGCGGGa-------CCGCG- -5'
30684 5' -62.1 NC_006552.1 + 31056 0.68 0.285105
Target:  5'- gGAUGCcgcccaGGCUUGCgccagagccugGCCGCCCagcagcagGGCGCg -3'
miRNA:   3'- gUUGCG------UCGAGCG-----------CGGCGGGa-------CCGCG- -5'
30684 5' -62.1 NC_006552.1 + 30105 0.67 0.335981
Target:  5'- uCGGCGUcGCUgGUGCCGCUC-GGCa- -3'
miRNA:   3'- -GUUGCGuCGAgCGCGGCGGGaCCGcg -5'
30684 5' -62.1 NC_006552.1 + 29330 0.73 0.133375
Target:  5'- gCGACGUcggGGcCUCGC-CUGCCgUGGCGCg -3'
miRNA:   3'- -GUUGCG---UC-GAGCGcGGCGGgACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 26829 0.66 0.393171
Target:  5'- cCAGCaGCAGUUCGCccaccaggGuCCGgCC-GGCGCg -3'
miRNA:   3'- -GUUG-CGUCGAGCG--------C-GGCgGGaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 24742 0.67 0.335981
Target:  5'- -uGCGCAGCgUCGCcaUGuCCUUGGCGUa -3'
miRNA:   3'- guUGCGUCG-AGCGcgGC-GGGACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 21138 0.68 0.313398
Target:  5'- ---gGUAGaUCG-GCCGCCC-GGCGCg -3'
miRNA:   3'- guugCGUCgAGCgCGGCGGGaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 20739 0.66 0.410632
Target:  5'- ---aGCAGCaacUGCGCUGCC--GGCGCc -3'
miRNA:   3'- guugCGUCGa--GCGCGGCGGgaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 20005 0.72 0.168766
Target:  5'- gAACGCGGCcaccuuuggCGCGUCGgCCUGGCcCa -3'
miRNA:   3'- gUUGCGUCGa--------GCGCGGCgGGACCGcG- -5'
30684 5' -62.1 NC_006552.1 + 19816 0.69 0.246504
Target:  5'- gCAGCGCGGCcCGgGCUcuuGCUC-GGCGCc -3'
miRNA:   3'- -GUUGCGUCGaGCgCGG---CGGGaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 15345 0.66 0.401841
Target:  5'- -uGCGCcaccGGCUCGaCGCCGCgUcGGaCGCc -3'
miRNA:   3'- guUGCG----UCGAGC-GCGGCGgGaCC-GCG- -5'
30684 5' -62.1 NC_006552.1 + 14909 0.67 0.328323
Target:  5'- aAAUGCGaCUgGCGcCCGCCg-GGCGCu -3'
miRNA:   3'- gUUGCGUcGAgCGC-GGCGGgaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 14873 0.66 0.393171
Target:  5'- -uGCGuCGGCaaucggCGUGCUgGCCCUGGUGg -3'
miRNA:   3'- guUGC-GUCGa-----GCGCGG-CGGGACCGCg -5'
30684 5' -62.1 NC_006552.1 + 13838 0.72 0.168766
Target:  5'- aCAACGCAaCcaaCGCCGCCCUGGCa- -3'
miRNA:   3'- -GUUGCGUcGagcGCGGCGGGACCGcg -5'
30684 5' -62.1 NC_006552.1 + 13083 0.68 0.320796
Target:  5'- gCAAgGCAGCagagcccaGCGCUaCCCagUGGCGCg -3'
miRNA:   3'- -GUUgCGUCGag------CGCGGcGGG--ACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 11894 0.71 0.191885
Target:  5'- -cGCGCAGC-C-CGCCGCgC-GGCGCa -3'
miRNA:   3'- guUGCGUCGaGcGCGGCGgGaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 11206 0.66 0.428567
Target:  5'- ---gGCAgGCcaggCGCGUgGCCCUGGCc- -3'
miRNA:   3'- guugCGU-CGa---GCGCGgCGGGACCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.