miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30684 5' -62.1 NC_006552.1 + 62476 0.67 0.3679
Target:  5'- uCAGCGCAGCUUG-G-CGCCaucGCGCg -3'
miRNA:   3'- -GUUGCGUCGAGCgCgGCGGgacCGCG- -5'
30684 5' -62.1 NC_006552.1 + 60235 0.68 0.298993
Target:  5'- uCGGC-CAGCUUG-GCCucaGCCUUGGCGUu -3'
miRNA:   3'- -GUUGcGUCGAGCgCGG---CGGGACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 58186 0.68 0.320796
Target:  5'- gAACuGCGuCUCGCGCacgGCCC-GGCGUg -3'
miRNA:   3'- gUUG-CGUcGAGCGCGg--CGGGaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 57980 0.67 0.335981
Target:  5'- -cGCGCAGCgagcCGCuGCCGCgggCCU-GCGCc -3'
miRNA:   3'- guUGCGUCGa---GCG-CGGCG---GGAcCGCG- -5'
30684 5' -62.1 NC_006552.1 + 57045 0.67 0.359728
Target:  5'- -cGCGCAGUaUCGCgGCC-CCCUccuGCGCa -3'
miRNA:   3'- guUGCGUCG-AGCG-CGGcGGGAc--CGCG- -5'
30684 5' -62.1 NC_006552.1 + 56965 0.66 0.393171
Target:  5'- aAGCGCAGCaugUCgGCGCgGgCCaUGGUGUc -3'
miRNA:   3'- gUUGCGUCG---AG-CGCGgCgGG-ACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 56779 0.66 0.401841
Target:  5'- --uCGgGGCUCaG-GCCGCgCCaGGCGCg -3'
miRNA:   3'- guuGCgUCGAG-CgCGGCG-GGaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 54736 0.66 0.401841
Target:  5'- aCGGCGCaggcgagccAGCgcaGUGCCGCCUucUGGCa- -3'
miRNA:   3'- -GUUGCG---------UCGag-CGCGGCGGG--ACCGcg -5'
30684 5' -62.1 NC_006552.1 + 52365 0.67 0.343768
Target:  5'- uGGCGaCAGCcuucugcUGCGCUGCCC-GGCGg -3'
miRNA:   3'- gUUGC-GUCGa------GCGCGGCGGGaCCGCg -5'
30684 5' -62.1 NC_006552.1 + 51514 0.66 0.384623
Target:  5'- -uACG-GGCguccaGUGCCG-CCUGGCGCa -3'
miRNA:   3'- guUGCgUCGag---CGCGGCgGGACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 49707 0.66 0.376199
Target:  5'- --gUGCGGCUUGCGCCuGCU---GCGCg -3'
miRNA:   3'- guuGCGUCGAGCGCGG-CGGgacCGCG- -5'
30684 5' -62.1 NC_006552.1 + 49640 0.67 0.3679
Target:  5'- uGGCGUcggGGCUugcugcUGCGCCGCCUgguccagGGCGa -3'
miRNA:   3'- gUUGCG---UCGA------GCGCGGCGGGa------CCGCg -5'
30684 5' -62.1 NC_006552.1 + 46882 0.69 0.278354
Target:  5'- gGGCGCAGCacuggaacuUgGCGCCGCugcacCCUGG-GCu -3'
miRNA:   3'- gUUGCGUCG---------AgCGCGGCG-----GGACCgCG- -5'
30684 5' -62.1 NC_006552.1 + 45243 0.69 0.278354
Target:  5'- aGGCGCGGCcUGCGCaucgagcacgucCGCCUUGGC-Cg -3'
miRNA:   3'- gUUGCGUCGaGCGCG------------GCGGGACCGcG- -5'
30684 5' -62.1 NC_006552.1 + 43419 0.67 0.351684
Target:  5'- uCGACGUuugcgguccaAGcCUgGcCGCCGUCCUGGuCGCc -3'
miRNA:   3'- -GUUGCG----------UC-GAgC-GCGGCGGGACC-GCG- -5'
30684 5' -62.1 NC_006552.1 + 42969 0.67 0.346919
Target:  5'- uGACGCGauccGCUgcCGUgGCCGuaucgaccaccagcaCCCUGGCGCg -3'
miRNA:   3'- gUUGCGU----CGA--GCG-CGGC---------------GGGACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 40767 0.68 0.316342
Target:  5'- aGACGCAcguuuccaagcuGCUCGCGCaccagcgccauguagCGCUCUGGUaccaGCa -3'
miRNA:   3'- gUUGCGU------------CGAGCGCG---------------GCGGGACCG----CG- -5'
30684 5' -62.1 NC_006552.1 + 38882 0.66 0.391451
Target:  5'- cCAACaGCAGCUCGCcaccauUCGCUCgcgucagguagaGGCGCg -3'
miRNA:   3'- -GUUG-CGUCGAGCGc-----GGCGGGa-----------CCGCG- -5'
30684 5' -62.1 NC_006552.1 + 38732 0.67 0.359728
Target:  5'- -cGCGCAGCcaCGCcacaGCCGCgCCguaGGUGCc -3'
miRNA:   3'- guUGCGUCGa-GCG----CGGCG-GGa--CCGCG- -5'
30684 5' -62.1 NC_006552.1 + 36778 0.68 0.298993
Target:  5'- gUAGCGCGGCUCGaUGCUGauaCCgcgaaUGGCGa -3'
miRNA:   3'- -GUUGCGUCGAGC-GCGGCg--GG-----ACCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.