Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 58186 | 0.68 | 0.320796 |
|
Target: 5'- gAACuGCGuCUCGCGCacgGCCC-GGCGUg -3' miRNA: 3'- gUUG-CGUcGAGCGCGg--CGGGaCCGCG- -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 40767 | 0.68 | 0.316342 |
|
Target: 5'- aGACGCAcguuuccaagcuGCUCGCGCaccagcgccauguagCGCUCUGGUaccaGCa -3' miRNA: 3'- gUUGCGU------------CGAGCGCG---------------GCGGGACCG----CG- -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 32893 | 0.68 | 0.313398 |
|
Target: 5'- uCGAUGCGGCacacgGCGUCGgCCUGGCu- -3' miRNA: 3'- -GUUGCGUCGag---CGCGGCgGGACCGcg -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 4944 | 0.68 | 0.313398 |
|
Target: 5'- gCAACGCGGCcgCGCGCgGgcuuuCCCgccGCGCc -3' miRNA: 3'- -GUUGCGUCGa-GCGCGgC-----GGGac-CGCG- -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 21138 | 0.68 | 0.313398 |
|
Target: 5'- ---gGUAGaUCG-GCCGCCC-GGCGCg -3' miRNA: 3'- guugCGUCgAGCgCGGCGGGaCCGCG- -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 36778 | 0.68 | 0.298993 |
|
Target: 5'- gUAGCGCGGCUCGaUGCUGauaCCgcgaaUGGCGa -3' miRNA: 3'- -GUUGCGUCGAGC-GCGGCg--GG-----ACCGCg -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 60235 | 0.68 | 0.298993 |
|
Target: 5'- uCGGC-CAGCUUG-GCCucaGCCUUGGCGUu -3' miRNA: 3'- -GUUGcGUCGAGCgCGG---CGGGACCGCG- -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 31056 | 0.68 | 0.285105 |
|
Target: 5'- gGAUGCcgcccaGGCUUGCgccagagccugGCCGCCCagcagcagGGCGCg -3' miRNA: 3'- gUUGCG------UCGAGCG-----------CGGCGGGa-------CCGCG- -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 1053 | 1.11 | 0.000197 |
|
Target: 5'- gCAACGCAGCUCGCGCCGCCCUGGCGCa -3' miRNA: 3'- -GUUGCGUCGAGCGCGGCGGGACCGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home