Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 14873 | 0.66 | 0.393171 |
Target: 5'- -uGCGuCGGCaaucggCGUGCUgGCCCUGGUGg -3' miRNA: 3'- guUGC-GUCGa-----GCGCGG-CGGGACCGCg -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 56965 | 0.66 | 0.393171 |
Target: 5'- aAGCGCAGCaugUCgGCGCgGgCCaUGGUGUc -3' miRNA: 3'- gUUGCGUCG---AG-CGCGgCgGG-ACCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 26829 | 0.66 | 0.393171 |
Target: 5'- cCAGCaGCAGUUCGCccaccaggGuCCGgCC-GGCGCg -3' miRNA: 3'- -GUUG-CGUCGAGCG--------C-GGCgGGaCCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 31803 | 0.66 | 0.401841 |
Target: 5'- gUAGgGCGGCg-GCGCuuagacugCGCCgaGGCGCu -3' miRNA: 3'- -GUUgCGUCGagCGCG--------GCGGgaCCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 56779 | 0.66 | 0.401841 |
Target: 5'- --uCGgGGCUCaG-GCCGCgCCaGGCGCg -3' miRNA: 3'- guuGCgUCGAG-CgCGGCG-GGaCCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 15345 | 0.66 | 0.401841 |
Target: 5'- -uGCGCcaccGGCUCGaCGCCGCgUcGGaCGCc -3' miRNA: 3'- guUGCG----UCGAGC-GCGGCGgGaCC-GCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 54736 | 0.66 | 0.401841 |
Target: 5'- aCGGCGCaggcgagccAGCgcaGUGCCGCCUucUGGCa- -3' miRNA: 3'- -GUUGCG---------UCGag-CGCGGCGGG--ACCGcg -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 20739 | 0.66 | 0.410632 |
Target: 5'- ---aGCAGCaacUGCGCUGCC--GGCGCc -3' miRNA: 3'- guugCGUCGa--GCGCGGCGGgaCCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 11206 | 0.66 | 0.428567 |
Target: 5'- ---gGCAgGCcaggCGCGUgGCCCUGGCc- -3' miRNA: 3'- guugCGU-CGa---GCGCGgCGGGACCGcg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home