Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 2006 | 0.7 | 0.223249 |
|
Target: 5'- gAGCGCuGCaagGCGuuGUCCUGGcCGCa -3' miRNA: 3'- gUUGCGuCGag-CGCggCGGGACC-GCG- -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 11894 | 0.71 | 0.191885 |
|
Target: 5'- -cGCGCAGC-C-CGCCGCgC-GGCGCa -3' miRNA: 3'- guUGCGUCGaGcGCGGCGgGaCCGCG- -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 13838 | 0.72 | 0.168766 |
|
Target: 5'- aCAACGCAaCcaaCGCCGCCCUGGCa- -3' miRNA: 3'- -GUUGCGUcGagcGCGGCGGGACCGcg -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 20005 | 0.72 | 0.168766 |
|
Target: 5'- gAACGCGGCcaccuuuggCGCGUCGgCCUGGCcCa -3' miRNA: 3'- gUUGCGUCGa--------GCGCGGCgGGACCGcG- -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 464 | 0.72 | 0.168766 |
|
Target: 5'- aCGACGUGGCg-GCGCUGCaggUGGCGCu -3' miRNA: 3'- -GUUGCGUCGagCGCGGCGgg-ACCGCG- -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 29330 | 0.73 | 0.133375 |
|
Target: 5'- gCGACGUcggGGcCUCGC-CUGCCgUGGCGCg -3' miRNA: 3'- -GUUGCG---UC-GAGCGcGGCGGgACCGCG- -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 8470 | 0.74 | 0.116794 |
|
Target: 5'- --cCGUGGCgaggaacUGCGCCagGCCCUGGCGCu -3' miRNA: 3'- guuGCGUCGa------GCGCGG--CGGGACCGCG- -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 33094 | 0.79 | 0.05304 |
|
Target: 5'- aGGCGCAGCgaaGUGUCGCCCUGGaugGCg -3' miRNA: 3'- gUUGCGUCGag-CGCGGCGGGACCg--CG- -5' |
|||||||
| 30684 | 5' | -62.1 | NC_006552.1 | + | 1053 | 1.11 | 0.000197 |
|
Target: 5'- gCAACGCAGCUCGCGCCGCCCUGGCGCa -3' miRNA: 3'- -GUUGCGUCGAGCGCGGCGGGACCGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home